View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_low_13 (Length: 318)
Name: NF0254_low_13
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 40458444 - 40458729
Alignment:
| Q |
15 |
tattattgatattgttacttagccgtttaacaagtaccgttgttatgcttttgttcaagagttattgagaatagattgagaggtgcatttatggtgctct |
114 |
Q |
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| T |
40458444 |
tattattgatattgttacttagccgtttaacaagtaccgtcgttatgcttttgttcaagagttattgagaatagattgagaggtgcatttatggtgctct |
40458543 |
T |
|
| Q |
115 |
tagataagggaaccttagtgcatattttttggtaaaattgaatgccgccaacgatgataagttcaagatttggaactgctctccaaaatatttgaattct |
214 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
40458544 |
tagataagggaaccttagagcatattttttggcaaaattggatgccgccaacgatgacaagttcaagatttggaactcctctccaaaatacttgaattct |
40458643 |
T |
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| Q |
215 |
tttattttaagtgactccttgtattaagagagtaaaaattgaatgaagataatgattttcacattaatgaaagtgaatgtagaatg |
300 |
Q |
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| T |
40458644 |
tttattttaagtgactccttgtattaagagagtgaaaattgaatgaagataatgattttcacattaatgaaagtgaatgtagaatg |
40458729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 5665123 - 5665191
Alignment:
| Q |
233 |
ttgtattaagagagtaaaaattgaatgaagataatgattttcacattaatgaaagtgaatgtagaatga |
301 |
Q |
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| T |
5665123 |
ttgtattaagagagtgaaaaatgaataaagataatgattttctcattaatgaaagtgaatgtacaatga |
5665191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 5686564 - 5686632
Alignment:
| Q |
233 |
ttgtattaagagagtaaaaattgaatgaagataatgattttcacattaatgaaagtgaatgtagaatga |
301 |
Q |
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| T |
5686564 |
ttgtattaagagagtgaaaaatgaataaagataatgattttctcattaatgaaagtgaatgtacaatga |
5686632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 45646259 - 45646329
Alignment:
| Q |
161 |
gccaacgatgataagttcaagatttggaactgctctccaaaatatttgaattcttttattttaagtgactc |
231 |
Q |
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|||||| |||| ||||||||||||||| ||| | | ||| || | |||||||||||||||||||||||||| |
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| T |
45646259 |
gccaactatgacaagttcaagatttgggactccccaccagaagacttgaattcttttattttaagtgactc |
45646329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 45646099 - 45646152
Alignment:
| Q |
15 |
tattattgatattgttacttagccgtttaacaagtaccgttgttatgcttttgt |
68 |
Q |
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||||| ||||||||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
45646099 |
tattaatgatattgttactaagccagttaacaagtaccattgttatgcttttgt |
45646152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 42296556 - 42296642
Alignment:
| Q |
149 |
aaattgaatgccgccaacgatgataagttcaagatttggaactgctctccaaaatatttgaattcttttattttaagtgactccttg |
235 |
Q |
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|||||| |||| |||| | |||| || |||||||||||| ||| ||| ||| |||||||||||||| ||||||||||||||||| |
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| T |
42296556 |
aaattggatgctgccagcaatgacaaattcaagatttgggactctcctctgaaagatttgaattcttttcttttaagtgactccttg |
42296642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 19998367 - 19998416
Alignment:
| Q |
15 |
tattattgatattgttacttagccgtttaacaagtaccgttgttatgctt |
64 |
Q |
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||||||||||||||||||| |||| |||||||||||| ||| ||||||| |
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| T |
19998367 |
tattattgatattgttactaagccagttaacaagtaccattgctatgctt |
19998416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 51300683 - 51300631
Alignment:
| Q |
15 |
tattattgatattgttacttagccgtttaacaagtaccgttgttatgcttttg |
67 |
Q |
| |
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||||||||||||||||||| | || |||||||||||| |||||||| ||||| |
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| T |
51300683 |
tattattgatattgttactaaatcggttaacaagtaccattgttatggttttg |
51300631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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