View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_low_15 (Length: 310)
Name: NF0254_low_15
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 47408959 - 47409230
Alignment:
| Q |
16 |
acctaccaaatatgagagggacagaacacgatagagtcatctaaaatttaaagaaagagcttcgtaccttgatatccctgtgaataattcggttattgtg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47408959 |
acctaccaaatatgagagggacagaacacgatagagtcatctaaaatttaaagaaagagcttcgtaccttgatatccctgtgaataattcggttattgtg |
47409058 |
T |
|
| Q |
116 |
aaggtattcaagaccatctaaaagctgttttgtatacgttctgataacctgttnnnnnnnttgaacatgaagcaacnnnnnnngcacaacccatgatata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
47409059 |
aaggtattcaagaccatctaaaagctgttttgtatacgttctgataacctgttaaaaaaattgaacatgaagcaacaaaaaaagcacaacccatgatata |
47409158 |
T |
|
| Q |
216 |
ctccatgaacttgataaagtaaaatccactcaccgactcagggaaggatccgaatttccccaatagtgatga |
287 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47409159 |
ctccatgaacttgataaagtaaaatccactcaccgactcagggaaggatccgaatttccccaatagtgatga |
47409230 |
T |
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