View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0254_low_16 (Length: 297)
Name: NF0254_low_16
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_16 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 47193559 - 47193271
Alignment:
| Q |
1 |
cagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193559 |
cagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgttt |
47193460 |
T |
|
| Q |
101 |
cccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagctagaaattcagcttctccctgatgagct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47193459 |
cccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagctagaaattcagcttctccctgatgagct |
47193360 |
T |
|
| Q |
201 |
tcatttaagcatttaacagcagcaacacgatcatcatcgagtgtacctttgtaaacaatccctcctcctcctcgaccgatctctctgct |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47193359 |
tcatttaagcatttaacagcagcaacacgatcatcatcgagtgtacctttgtaaacaatccctcctcctcctcgaccgatctctttgct |
47193271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 9792651 - 9792406
Alignment:
| Q |
9 |
ttaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaa |
108 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||| |||| ||||||||||| |
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| T |
9792651 |
ttaaatctcttattccaatcaactgaattagaacatagattctcaactaatgaaccatgttccatatactcataaaccaaaagtctatttttcccttcaa |
9792552 |
T |
|
| Q |
109 |
cacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagctagaaattcagcttctccctgatgagcttcatttaa |
208 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||| | ||||||||||||||||| |
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| T |
9792551 |
cacaatatccccacatatcaattaaatttttatggttcaacataccaattgtacttatttaagctagaaatttagcttcttcttgatgagcttcatttaa |
9792452 |
T |
|
| Q |
209 |
gcatttaacagcagcaacacgatcatcatcgagtgtacctttgtaa |
254 |
Q |
| |
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||||||||||||||||||||||| ||| | ||||||| |||||||| |
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|
| T |
9792451 |
gcatttaacagcagcaacacgataatcgttgagtgtaactttgtaa |
9792406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 26737203 - 26737303
Alignment:
| Q |
45 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt |
144 |
Q |
| |
|
||||| || ||||||| ||||| ||| || |||||||| ||||| | ||||||| || ||| ||||||| |||||||| ||||||||||||| |||| |
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|
| T |
26737203 |
agattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattcatgtggt |
26737302 |
T |
|
| Q |
145 |
t |
145 |
Q |
| |
|
| |
|
|
| T |
26737303 |
t |
26737303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 6609365 - 6609487
Alignment:
| Q |
4 |
ctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttccc |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
6609365 |
ctacattaaatctcttattccaatcaagtgaattagaacatagattctcaactaatgaaccatgttccatatactcataaaccagaagcctatgtttccc |
6609464 |
T |
|
| Q |
104 |
ttcaacacaatatccccacatat |
126 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
6609465 |
ctcaacacaatatccccacatat |
6609487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 6624756 - 6624634
Alignment:
| Q |
4 |
ctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttccc |
103 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||| ||||||||||||||| |
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|
| T |
6624756 |
ctacattaaatctcttattccaatcaagtgaattagaacatagattctcaactaatgaaccatgttccgtatactcataaaccagaagcctatgtttccc |
6624657 |
T |
|
| Q |
104 |
ttcaacacaatatccccacatat |
126 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
6624656 |
ctcaacacaatatccccacatat |
6624634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 21130572 - 21130672
Alignment:
| Q |
45 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt |
144 |
Q |
| |
|
||||| |||||||||||||||| ||| || |||||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| |||||||| |||| |
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|
| T |
21130572 |
agattttccgctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggt |
21130671 |
T |
|
| Q |
145 |
t |
145 |
Q |
| |
|
| |
|
|
| T |
21130672 |
t |
21130672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 45 - 208
Target Start/End: Original strand, 18658734 - 18658897
Alignment:
| Q |
45 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt |
144 |
Q |
| |
|
||||| || |||||||| |||| ||| || |||||||| |||||||| ||||| || |||||| |||||||||||||||||||||| || ||||| |||| |
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| T |
18658734 |
agattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggt |
18658833 |
T |
|
| Q |
145 |
tcaacataccaattgtgcttatttcagctagaaattcagcttctccctgatgagcttcatttaa |
208 |
Q |
| |
|
| | | ||||| |||||| |||||| |||||||| ||||||| || | |||||||||||| |
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|
| T |
18658834 |
taagccgtccaatgatgcttacttcagcaagaaattctccttctccttgtttagcttcatttaa |
18658897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 21111612 - 21111712
Alignment:
| Q |
45 |
agattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggt |
144 |
Q |
| |
|
||||| || |||||||| |||| ||| || |||||||| |||||||| ||||| || |||||| |||||||||||||||| || || || ||||| |||| |
|
|
| T |
21111612 |
agattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggt |
21111711 |
T |
|
| Q |
145 |
t |
145 |
Q |
| |
|
| |
|
|
| T |
21111712 |
t |
21111712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 6609483 - 6609524
Alignment:
| Q |
137 |
catatggttcaacataccaattgtgcttatttcagctagaaa |
178 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||||||||| |
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|
| T |
6609483 |
catatggtttaacataccaattttgcttatttaagctagaaa |
6609524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 39132134 - 39132070
Alignment:
| Q |
75 |
tactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcat |
139 |
Q |
| |
|
|||||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
39132134 |
tactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaattaagttcat |
39132070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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