View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_low_18 (Length: 289)
Name: NF0254_low_18
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 7278977 - 7278837
Alignment:
| Q |
21 |
atcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
120 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7278977 |
atcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
7278878 |
T |
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| Q |
121 |
aagagaattgtttggagaaggaagaggtggggtgtgaagag |
161 |
Q |
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| T |
7278877 |
aagagaattgtttggagaaggaagaggtggggtgtgaagag |
7278837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 7374862 - 7375002
Alignment:
| Q |
21 |
atcaaaagggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
120 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374862 |
atcaaaagggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttg |
7374961 |
T |
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| Q |
121 |
aagagaattgtttggagaaggaagaggtggggtgtgaagag |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374962 |
aagagaattgtttggagaaggaagaggtggggtgtgaagag |
7375002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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