View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_low_22 (Length: 260)

Name: NF0254_low_22
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_low_22
NF0254_low_22
[»] chr5 (1 HSPs)
chr5 (19-231)||(1781424-1781636)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 1781424 - 1781636
Alignment:
Q  19 atgaaattatagtacacctagagagaatttagtgtattttaaaaggaaaagaaaattatcaaagcatcgtgatcttgttgtttcacaaacacaaaactct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1781424 atgaaattatagtacacctagagagaatttagtgtattttaaaaggaaaagaaaattatcaaagcatcgcgatcttgttgtttcacaaacacaaaactct 1781523  T
Q  119 ttcttacaaaatctgcaatagtgttagaacctcctcatagatcgattcaaacaaaacgcaatggattcttctcacatgacgtcacttcccgaagacatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781524 ttcttacaaaatctgcaatagtgttagaacctcctcatagatcgattcaaacaaaacgcaatggattcttctcacatgacgtcacttcccgaagacatca 1781623  T
Q  219 ccgacgatcaacc 231  Q
    |||||||||||||    
T  1781624 ccgacgatcaacc 1781636  T

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