View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0254_low_24 (Length: 251)

Name: NF0254_low_24
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0254_low_24
NF0254_low_24
[»] chr4 (9 HSPs)
chr4 (2-240)||(37926528-37926766)
chr4 (133-233)||(21956833-21956933)
chr4 (192-230)||(25265225-25265263)
chr4 (207-237)||(33616208-33616238)
chr4 (207-240)||(8843897-8843930)
chr4 (207-240)||(8856861-8856894)
chr4 (208-237)||(36306757-36306786)
chr4 (184-237)||(54270588-54270641)
chr4 (190-230)||(4237370-4237410)
[»] chr6 (1 HSPs)
chr6 (189-237)||(1947865-1947913)
[»] chr1 (3 HSPs)
chr1 (133-237)||(39219225-39219329)
chr1 (132-237)||(48125700-48125805)
chr1 (209-237)||(13798205-13798233)
[»] chr5 (3 HSPs)
chr5 (208-237)||(12457483-12457512)
chr5 (208-236)||(17153136-17153164)
chr5 (133-237)||(38972888-38972992)
[»] chr8 (2 HSPs)
chr8 (189-233)||(6388579-6388623)
chr8 (209-237)||(14155498-14155526)
[»] chr3 (1 HSPs)
chr3 (209-237)||(42243353-42243381)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 37926766 - 37926528
Alignment:
Q  2 taaacggccaaaaatatcctttactaaaagtctaattttgccccaacagcctacatgaaagaacttggtggagatatcaaatttattgggcaaaattatc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37926766 taaacggccaaaaatatcctttactaaaagtctaattttgccccaacagcctacatgaaagaacttggtggagatatcaaatttattgggcaaaattatc 37926667  T
Q  102 cttatcatcctttaatttaattttaaacaatgattttaaaacatgggtacgagataagtaacagggatataagtatccagtctgaatccatactcaaact 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||| |||||| ||||||    
T  37926666 cttatcatcctttaatttaattttaaacaatgattttaaaacatgggtaccagacaagtaacagggatataagtacccggtctgaacccatacccaaact 37926567  T
Q  202 cattttgaatgtagaaaatcaatttattacccctttcat 240  Q
    |||  ||||||||| |||| ||||||||| |||||||||    
T  37926566 catcctgaatgtagtaaattaatttattatccctttcat 37926528  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 21956833 - 21956933
Alignment:
Q  133 gattttaaaacatgggtacgagataagtaacagggatataagtatccagtctgaatccatactcaaactcattttgaatgtagaaaatcaatttattacc 232  Q
    |||||||||||| |||||||  || |||||| |||||||| ||  |||  | ||| |||||| ||||||| ||  |||||||||||||||||||||||||    
T  21956833 gattttaaaacacgggtacggaatgagtaacggggatataggtgcccaccccgaacccatacccaaactcgttacgaatgtagaaaatcaatttattacc 21956932  T
Q  233 c 233  Q
    |    
T  21956933 c 21956933  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 25265225 - 25265263
Alignment:
Q  192 tactcaaactcattttgaatgtagaaaatcaatttatta 230  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  25265225 tactcaaactcatctcgaatgtagaaaatcaatttatta 25265263  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 33616208 - 33616238
Alignment:
Q  207 tgaatgtagaaaatcaatttattaccccttt 237  Q
    |||||||||||||||||||||||||||||||    
T  33616208 tgaatgtagaaaatcaatttattaccccttt 33616238  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 8843897 - 8843930
Alignment:
Q  207 tgaatgtagaaaatcaatttattacccctttcat 240  Q
    |||||||||||||| |||||||||||||||||||    
T  8843897 tgaatgtagaaaattaatttattacccctttcat 8843930  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 8856861 - 8856894
Alignment:
Q  207 tgaatgtagaaaatcaatttattacccctttcat 240  Q
    |||||||||||||| |||||||||||||||||||    
T  8856861 tgaatgtagaaaattaatttattacccctttcat 8856894  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 36306786 - 36306757
Alignment:
Q  208 gaatgtagaaaatcaatttattaccccttt 237  Q
    ||||||||||||||||||||||||||||||    
T  36306786 gaatgtagaaaatcaatttattaccccttt 36306757  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 54270641 - 54270588
Alignment:
Q  184 tgaatccatactcaaactcattttgaatgtagaaaatcaatttattaccccttt 237  Q
    |||| ||||| |||||||| | | ||||||||||||||||||||||||| ||||    
T  54270641 tgaacccatattcaaactcttctagaatgtagaaaatcaatttattacctcttt 54270588  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 4237370 - 4237410
Alignment:
Q  190 catactcaaactcattttgaatgtagaaaatcaatttatta 230  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  4237370 catactcaaactcatttcaaatgtagaaaattaatttatta 4237410  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 1947865 - 1947913
Alignment:
Q  189 ccatactcaaactcattttgaatgtagaaaatcaatttattaccccttt 237  Q
    |||||||||||||| ||   |||||||||||||||||||||||||||||    
T  1947865 ccatactcaaactcgttccaaatgtagaaaatcaatttattaccccttt 1947913  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 39219329 - 39219225
Alignment:
Q  133 gattttaaaacatgggtacgagataagtaacagggatataagtatccagtctgaatccatactcaaactcattttgaatgtagaaaatcaatttattacc 232  Q
    |||||||||||| |||||||  | ||||||| |||||| | ||| |||  | ||| |||||| ||||||| || | |||||||||||| |||||||||||    
T  39219329 gattttaaaacacgggtacggaacaagtaacggggatacatgtacccaccccgaacccatacccaaactcgttctaaatgtagaaaattaatttattacc 39219230  T
Q  233 ccttt 237  Q
     ||||    
T  39219229 tcttt 39219225  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 48125700 - 48125805
Alignment:
Q  132 tgattttaaaacatgggtacgagataagtaacagggatataagtatccagtctgaatccatactcaaactcattttgaatgtagaaaatcaatttattac 231  Q
    ||||||||||||| ||||||| ||   |||||  ||||||| |||||||  | ||| |||||| ||||||| |   |||||||||||||||||||| |||    
T  48125700 tgattttaaaacacgggtacgggacgggtaacgaggatataggtatccaccccgaacccatacccaaactcgtcgcgaatgtagaaaatcaatttactac 48125799  T
Q  232 cccttt 237  Q
    | ||||    
T  48125800 cgcttt 48125805  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 13798233 - 13798205
Alignment:
Q  209 aatgtagaaaatcaatttattaccccttt 237  Q
    |||||||||||||||||||||||||||||    
T  13798233 aatgtagaaaatcaatttattaccccttt 13798205  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Complemental strand, 12457512 - 12457483
Alignment:
Q  208 gaatgtagaaaatcaatttattaccccttt 237  Q
    ||||||||||||||||||||||||||||||    
T  12457512 gaatgtagaaaatcaatttattaccccttt 12457483  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 236
Target Start/End: Complemental strand, 17153164 - 17153136
Alignment:
Q  208 gaatgtagaaaatcaatttattacccctt 236  Q
    |||||||||||||||||||||||||||||    
T  17153164 gaatgtagaaaatcaatttattacccctt 17153136  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 38972992 - 38972888
Alignment:
Q  133 gattttaaaacatgggtacgagataagtaacagggatataagtatccagtctgaatccatactcaaactcattttgaatgtagaaaatcaatttattacc 232  Q
    ||||| |||||||||||| | |||| ||||| || ||||| ||| |||  | ||| |||||||||||| ||| |  |||| | ||||||||||||||| |    
T  38972992 gatttcaaaacatgggtatgggataggtaacgggaatataggtacccaccccgaacccatactcaaacccatctcaaatgcataaaatcaatttattaac 38972893  T
Q  233 ccttt 237  Q
    |||||    
T  38972892 ccttt 38972888  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 6388579 - 6388623
Alignment:
Q  189 ccatactcaaactcattttgaatgtagaaaatcaatttattaccc 233  Q
    |||| ||||||| |||  |||||||||||||||||||||||||||    
T  6388579 ccatgctcaaacccatcctgaatgtagaaaatcaatttattaccc 6388623  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 14155526 - 14155498
Alignment:
Q  209 aatgtagaaaatcaatttattaccccttt 237  Q
    |||||||||||||||||||||||||||||    
T  14155526 aatgtagaaaatcaatttattaccccttt 14155498  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 42243381 - 42243353
Alignment:
Q  209 aatgtagaaaatcaatttattaccccttt 237  Q
    |||||||||||||||||||||||||||||    
T  42243381 aatgtagaaaatcaatttattaccccttt 42243353  T

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