View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0254_low_5 (Length: 424)
Name: NF0254_low_5
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 6 - 395
Target Start/End: Original strand, 31188614 - 31189003
Alignment:
| Q |
6 |
aggagcacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaag |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31188614 |
aggaacacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaag |
31188713 |
T |
|
| Q |
106 |
aggggcatcacatatataatagtagacaagttaaaatattagatcacctnnnnnnnnnnttcgatgctattatttttggagaatatgaatattttaatca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31188714 |
aggggcatcacatatataatagtagacaagttaaaatattagatcacctaaaaaaaaaattcgatgctattatttttggagaatatgaatattttaatca |
31188813 |
T |
|
| Q |
206 |
tatacctaatattttcattacacatattaaggttatgacttaatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgtt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31188814 |
tatacctaatattttcattacacatattaaggatatgacttaatcacgacttactagttacttccacataagataaaatcattttctagtatagcttgtt |
31188913 |
T |
|
| Q |
306 |
ctccattcgtagcatacgcagcaaccaacttctaaaggatttaagatgataacattatgaattgttaatgactttgcataagtataaaaa |
395 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31188914 |
ctccatttgtagcatacgcagcaaccaacttctaaatgatttaagatgataacattatgaattgttcatgactttgcataagtataaaaa |
31189003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 395
Target Start/End: Original strand, 31200445 - 31200810
Alignment:
| Q |
30 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200445 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
31200544 |
T |
|
| Q |
130 |
gacaagttaaaatattagatcacctnnnnnnnnnnttcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
229 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31200545 |
gacaagttaaaatattagatcacctaaaaaaaaaattcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
31200644 |
T |
|
| Q |
230 |
tattaaggttatgacttaatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccattcgtagcatacgcagcaa |
329 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31200645 |
tattaaggatatgacttaatcacgacttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaa |
31200744 |
T |
|
| Q |
330 |
ccaacttctaaaggatttaagatgataacattatgaattgttaatgactttgcataagtataaaaa |
395 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31200745 |
ccaacttctaaatgatttaagatgataacattatgaattgttcatgactttgcataagtataaaaa |
31200810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 31170908 - 31170982
Alignment:
| Q |
247 |
aatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccattcgtagcata |
321 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31170908 |
aatcacggctttctagtgacttccacataaaataaaaacattttctagtatagcttgttctccatttgtagcata |
31170982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 264 - 363
Target Start/End: Original strand, 31144770 - 31144869
Alignment:
| Q |
264 |
tacttccacataagataaaatcattttctagtatagcttgttctccattcgtagcatacgcagcaaccaacttctaaaggat-ttaagatgataacatta |
362 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| | ||||||||||| |||||||| |||||||| |||||||||||| | | ||||||||||||||| |
|
|
| T |
31144770 |
tacttccaaataagataaaaatattttctagtataacatgttctccatt-gtagcatatgcagcaacaaacttctaaaggttataaagatgataacatta |
31144868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 368
Target Start/End: Complemental strand, 31225277 - 31225168
Alignment:
| Q |
257 |
tactagttacttccacataagataaaatcattttctagtatagcttgttctccattcgtagcatacgcagcaaccaacttctaaaggatttaagatgata |
356 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| |||||||||||||| | |||| ||||| || |||| ||||||| |||||||| || |||| || |
|
|
| T |
31225277 |
tactagttgcttccacataagataaact--ttttgtagtatagcttgtttttcatttgtagcttatgcagtcgccaacttataaaggatatatgatgtta |
31225180 |
T |
|
| Q |
357 |
acattatgaatt |
368 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
31225179 |
aaattataaatt |
31225168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 456 times since January 2019
Visitors: 2566