View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_low_6 (Length: 423)
Name: NF0254_low_6
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 394
Target Start/End: Original strand, 31188614 - 31189003
Alignment:
| Q |
6 |
aggagcacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaag |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188614 |
aggaacacagaaacatgaagcacaaaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaag |
31188713 |
T |
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| Q |
106 |
aggggcatcacatatataatagtagacaagttaaaatattagatcacctnnnnnnnnn-ttcgatgctattatttttggagaatatgaatattttaatca |
204 |
Q |
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| T |
31188714 |
aggggcatcacatatataatagtagacaagttaaaatattagatcacctaaaaaaaaaattcgatgctattatttttggagaatatgaatattttaatca |
31188813 |
T |
|
| Q |
205 |
tatacctaatattttcattacacatattaaggttatgacttaatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgtt |
304 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31188814 |
tatacctaatattttcattacacatattaaggatatgacttaatcacgacttactagttacttccacataagataaaatcattttctagtatagcttgtt |
31188913 |
T |
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| Q |
305 |
ctccattcgtagcatacgcagcaaccaacttctaaaggatttaagatgataacattatgaattgttaatgactttgcataagtataaaaa |
394 |
Q |
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| T |
31188914 |
ctccatttgtagcatacgcagcaaccaacttctaaatgatttaagatgataacattatgaattgttcatgactttgcataagtataaaaa |
31189003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 394
Target Start/End: Original strand, 31200445 - 31200810
Alignment:
| Q |
30 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
129 |
Q |
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| T |
31200445 |
aaaagaatatgcaaggcagcaccgaaacagaaacaaaaacatcacaaaaactgccaatgcaaagcaccaaaagaagaggggcatcacatatataatagta |
31200544 |
T |
|
| Q |
130 |
gacaagttaaaatattagatcacctnnnnnnnnn-ttcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
228 |
Q |
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| T |
31200545 |
gacaagttaaaatattagatcacctaaaaaaaaaattcgatgctattatttttggagaatatgaatattttaatcatatacctaatattttcattacaca |
31200644 |
T |
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| Q |
229 |
tattaaggttatgacttaatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccattcgtagcatacgcagcaa |
328 |
Q |
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| T |
31200645 |
tattaaggatatgacttaatcacgacttactagttacttccacataagataaaatcattttctagtatagcttgttctccatttgtagcatacgcagcaa |
31200744 |
T |
|
| Q |
329 |
ccaacttctaaaggatttaagatgataacattatgaattgttaatgactttgcataagtataaaaa |
394 |
Q |
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| T |
31200745 |
ccaacttctaaatgatttaagatgataacattatgaattgttcatgactttgcataagtataaaaa |
31200810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 31170908 - 31170982
Alignment:
| Q |
246 |
aatcacggcttactagttacttccacataagataaaatcattttctagtatagcttgttctccattcgtagcata |
320 |
Q |
| |
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||||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
31170908 |
aatcacggctttctagtgacttccacataaaataaaaacattttctagtatagcttgttctccatttgtagcata |
31170982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 31144770 - 31144869
Alignment:
| Q |
263 |
tacttccacataagataaaatcattttctagtatagcttgttctccattcgtagcatacgcagcaaccaacttctaaaggat-ttaagatgataacatta |
361 |
Q |
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|||||||| ||||||||||| ||||||||||||| | ||||||||||| |||||||| |||||||| |||||||||||| | | ||||||||||||||| |
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| T |
31144770 |
tacttccaaataagataaaaatattttctagtataacatgttctccatt-gtagcatatgcagcaacaaacttctaaaggttataaagatgataacatta |
31144868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 367
Target Start/End: Complemental strand, 31225277 - 31225168
Alignment:
| Q |
256 |
tactagttacttccacataagataaaatcattttctagtatagcttgttctccattcgtagcatacgcagcaaccaacttctaaaggatttaagatgata |
355 |
Q |
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|||||||| ||||||||||||||||| | |||| |||||||||||||| | |||| ||||| || |||| ||||||| |||||||| || |||| || |
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| T |
31225277 |
tactagttgcttccacataagataaact--ttttgtagtatagcttgtttttcatttgtagcttatgcagtcgccaacttataaaggatatatgatgtta |
31225180 |
T |
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| Q |
356 |
acattatgaatt |
367 |
Q |
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| T |
31225179 |
aaattataaatt |
31225168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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