View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0254_low_8 (Length: 403)
Name: NF0254_low_8
Description: NF0254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0254_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 7278970 - 7278837
Alignment:
| Q |
142 |
gggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaa |
241 |
Q |
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| T |
7278970 |
gggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaa |
7278871 |
T |
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| Q |
242 |
ttgtttggagaaggaagaggtggggtgtgaagag |
275 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7278870 |
ttgtttggagaaggaagaggtggggtgtgaagag |
7278837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 142 - 275
Target Start/End: Original strand, 7374869 - 7375002
Alignment:
| Q |
142 |
gggctatagttctgcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaa |
241 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7374869 |
gggctattgttcttcaagaatttgttgatcaaattcaaatggtgggtcccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaa |
7374968 |
T |
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| Q |
242 |
ttgtttggagaaggaagaggtggggtgtgaagag |
275 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7374969 |
ttgtttggagaaggaagaggtggggtgtgaagag |
7375002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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