View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0255_high_1 (Length: 547)

Name: NF0255_high_1
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0255_high_1
NF0255_high_1
[»] chr4 (7 HSPs)
chr4 (366-539)||(32649321-32649494)
chr4 (255-366)||(32649169-32649281)
chr4 (208-277)||(32649095-32649164)
chr4 (166-210)||(32225581-32225625)
chr4 (168-207)||(23976706-23976745)
chr4 (167-205)||(44376078-44376116)
chr4 (167-208)||(17558824-17558865)
[»] chr2 (3 HSPs)
chr2 (168-337)||(22136279-22136449)
chr2 (112-168)||(32073854-32073910)
chr2 (30-82)||(32073796-32073855)
[»] chr5 (7 HSPs)
chr5 (166-222)||(16349713-16349769)
chr5 (168-222)||(4082574-4082628)
chr5 (167-205)||(30096275-30096313)
chr5 (168-226)||(16222687-16222745)
chr5 (168-210)||(40951482-40951524)
chr5 (168-205)||(25099236-25099273)
chr5 (168-205)||(25158326-25158363)
[»] chr8 (5 HSPs)
chr8 (166-220)||(16367864-16367918)
chr8 (168-220)||(42308123-42308175)
chr8 (167-205)||(405353-405391)
chr8 (166-212)||(771642-771688)
chr8 (168-196)||(17695634-17695662)
[»] chr1 (5 HSPs)
chr1 (165-205)||(28947451-28947491)
chr1 (162-220)||(27840301-27840359)
chr1 (168-210)||(51387129-51387171)
chr1 (163-220)||(47250304-47250361)
chr1 (168-212)||(50293655-50293699)
[»] chr7 (1 HSPs)
chr7 (166-205)||(31097904-31097943)
[»] scaffold0896 (1 HSPs)
scaffold0896 (168-205)||(1109-1146)
[»] chr6 (2 HSPs)
chr6 (168-205)||(8657064-8657101)
chr6 (168-205)||(33289070-33289107)
[»] chr3 (2 HSPs)
chr3 (168-213)||(53693213-53693258)
chr3 (168-212)||(44708227-44708271)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 366 - 539
Target Start/End: Original strand, 32649321 - 32649494
Alignment:
Q  366 aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacaatgatattaaccatcaggaattgcataagga 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  32649321 aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacatagatattaaccatcaggaattgcataagga 32649420  T
Q  466 taacgattggcaggctatcaaactaattagttataatagaaagttctactccttgttctttattgcttcatctc 539  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32649421 taacaattggcaggctatcaaactaattagttatagtagaaagttctactccttgttctttattgcttcatctc 32649494  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 255 - 366
Target Start/End: Original strand, 32649169 - 32649281
Alignment:
Q  255 cagagaatatgtctgttgttacagacttatgtgtggtctcgtgatatacg-atgtaacgtagtgtgttttgttgtttcactaaacttatgtgacagtata 353  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  32649169 cagagaatatgtctgttgttacaaacttatgtgtggtctcgtgatatacgaatgtagcgttgtgtgttttgttgtgtcactaaacttatgtgacagtata 32649268  T
Q  354 tttagtcattaga 366  Q
     ||||||||||||    
T  32649269 cttagtcattaga 32649281  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 208 - 277
Target Start/End: Original strand, 32649095 - 32649164
Alignment:
Q  208 gtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtctgttgttaca 277  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  32649095 gtttaagacattacttgaaatatattgtagtatgaatgaacttttcgcagaaaatatgtctgttgttaca 32649164  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 32225581 - 32225625
Alignment:
Q  166 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtt 210  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||    
T  32225581 aaactagatcgtccaccggtgctgccgcacgggtcatatatagtt 32225625  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 23976706 - 23976745
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatata 207  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  23976706 actagatcgtccacccgtgctgccgcacgggtcatatata 23976745  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 44376078 - 44376116
Alignment:
Q  167 aactagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  44376078 aactagatcgtccacccgtgctgccgcacgggtcatata 44376116  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 17558824 - 17558865
Alignment:
Q  167 aactagatcgtccacccgtgctgccgcacgtatcatatatag 208  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcatatatag 17558865  T

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Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 168 - 337
Target Start/End: Original strand, 22136279 - 22136449
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtc 267  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||||||| | |||||||||| ||||||||   ||||| || |||||||||||||    
T  22136279 actagatcgtccacccgtgttgccgcacgggtcatatatagtttaagacattactcgaaatatattgtagtatga---aacttgtcgcagagaatatgtc 22136375  T
Q  268 tgttgttacagacttatgtgtggtctcgtgatatac----gatgtaacgtagtgtgttttgttgtttcactaaa 337  Q
    |||||||||| |||||||||||||||||||||||||     |||||||||||||||||||| |||| |||||||    
T  22136376 tgttgttacaaacttatgtgtggtctcgtgatatactacaaatgtaacgtagtgtgttttgctgttccactaaa 22136449  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 32073854 - 32073910
Alignment:
Q  112 acttttgataggtatgaaagagtgtcaaactattgtcgctagtctgcaataaataaa 168  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  32073854 acttttgataggtatgaaagagcgacaaactattgtcactagtctgcaataaataaa 32073910  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 32073796 - 32073855
Alignment:
Q  30 tgaacaatatagccagtcccataa-------ttaggtagctataagcattctctagttac 82  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  32073796 tgaacaatatagccagtcccataaatcatacttaggtagctataagcattctctagttac 32073855  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 16349713 - 16349769
Alignment:
Q  166 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt 222  Q
    |||||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  16349713 aaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 16349769  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 4082628 - 4082574
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt 222  Q
    |||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 4082574  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 30096275 - 30096313
Alignment:
Q  167 aactagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  30096275 aactagatcgtccacccgtgctgccgcacggatcatata 30096313  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 16222745 - 16222687
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaa 226  Q
    ||||||||||| |||||||||||||||| | |||||||||| | || |||||| |||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaa 16222687  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 40951524 - 40951482
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagtt 210  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  40951524 actagatcgtctacccgtgctgccgcacgggtcatatatagtt 40951482  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 25099236 - 25099273
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    |||||||||||||||||||||||||||||  |||||||    
T  25099236 actagatcgtccacccgtgctgccgcacgggtcatata 25099273  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 25158326 - 25158363
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    |||||||||||||||||||||||||||||  |||||||    
T  25158326 actagatcgtccacccgtgctgccgcacgggtcatata 25158363  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 16367918 - 16367864
Alignment:
Q  166 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 220  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 42308123 - 42308175
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 220  Q
    ||||||||||||||| |||||||||||||  |||||||||||| || ||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacatta 42308175  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 405353 - 405391
Alignment:
Q  167 aactagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  405353 aactagatcgtccacccgtgctgccgcacgggtcatata 405391  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 771688 - 771642
Alignment:
Q  166 aaactagatcgtccacccgtgctgccgcacgtatcatatatagttta 212  Q
    ||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  771688 aaactaggtcgtctacccgtgctgccgcacgggtcatatatagttta 771642  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 17695662 - 17695634
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacg 196  Q
    |||||||||||||||||||||||||||||    
T  17695662 actagatcgtccacccgtgctgccgcacg 17695634  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 28947451 - 28947491
Alignment:
Q  165 taaactagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  28947451 taaactagatcgtccacccgtgctgccgcacgggtcatata 28947491  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 27840301 - 27840359
Alignment:
Q  162 aaataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 220  Q
    |||| |||||||||||| |||||||||| ||||||  |||| |||||||||| ||||||    
T  27840301 aaatgaactagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacatta 27840359  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 51387129 - 51387171
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagtt 210  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagtt 51387171  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 47250361 - 47250304
Alignment:
Q  163 aataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 220  Q
    |||| ||||||||||||| ||| |||||||||||  |||||||||||| || ||||||    
T  47250361 aatatactagatcgtccatccgagctgccgcacgggtcatatatagttaaaaacatta 47250304  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 50293699 - 50293655
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagttta 212  Q
    ||||||||||| |||| ||||||||||||  ||||||||||||||    
T  50293699 actagatcgtctacccatgctgccgcacgggtcatatatagttta 50293655  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 31097943 - 31097904
Alignment:
Q  166 aaactagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31097943 aaactagatcgtccacccgtgctgccgcacgggtcatata 31097904  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 1146 - 1109
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    |||||||||||||||||||||||||||||  |||||||    
T  1146 actagatcgtccacccgtgctgccgcacgggtcatata 1109  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 8657064 - 8657101
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    |||||||||||||||||||||||||||||  |||||||    
T  8657064 actagatcgtccacccgtgctgccgcacgggtcatata 8657101  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 33289070 - 33289107
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatata 205  Q
    |||||||||||||||||||||||||||||  |||||||    
T  33289070 actagatcgtccacccgtgctgccgcacgggtcatata 33289107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 53693258 - 53693213
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaa 213  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||    
T  53693258 actagatcgtctacccgtgctgccgcacaggtcatatatagtttaa 53693213  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 44708227 - 44708271
Alignment:
Q  168 actagatcgtccacccgtgctgccgcacgtatcatatatagttta 212  Q
    ||||||||||| |||||||||||||||||  ||||||||| ||||    
T  44708227 actagatcgtctacccgtgctgccgcacgggtcatatataattta 44708271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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