View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0255_high_16 (Length: 280)

Name: NF0255_high_16
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0255_high_16
NF0255_high_16
[»] chr7 (3 HSPs)
chr7 (60-280)||(11303146-11303366)
chr7 (60-268)||(16108766-16108960)
chr7 (162-258)||(46173782-46173878)
[»] chr4 (9 HSPs)
chr4 (60-280)||(15534080-15534300)
chr4 (60-280)||(14048490-14048696)
chr4 (162-258)||(33198527-33198623)
chr4 (158-231)||(49547867-49547940)
chr4 (205-268)||(36037880-36037943)
chr4 (168-236)||(36037864-36037932)
chr4 (205-268)||(49547851-49547914)
chr4 (64-112)||(14063160-14063208)
chr4 (205-255)||(14063242-14063292)
[»] chr2 (1 HSPs)
chr2 (60-280)||(20261118-20261338)
[»] chr3 (5 HSPs)
chr3 (60-280)||(12305043-12305267)
chr3 (158-231)||(54520818-54520891)
chr3 (205-257)||(29544910-29544962)
chr3 (205-268)||(54520844-54520907)
chr3 (168-231)||(29544915-29544978)
[»] chr6 (1 HSPs)
chr6 (60-280)||(12942094-12942320)
[»] chr5 (3 HSPs)
chr5 (60-268)||(37805002-37805198)
chr5 (158-231)||(42242249-42242322)
chr5 (207-258)||(42242243-42242294)
[»] chr8 (7 HSPs)
chr8 (158-258)||(29327669-29327769)
chr8 (64-112)||(21322139-21322187)
chr8 (64-112)||(21326727-21326775)
chr8 (158-219)||(21322046-21322107)
chr8 (158-219)||(21326634-21326695)
chr8 (207-243)||(21322043-21322079)
chr8 (207-243)||(21326631-21326667)
[»] scaffold0506 (3 HSPs)
scaffold0506 (64-112)||(8662-8710)
scaffold0506 (158-231)||(8742-8815)
scaffold0506 (207-256)||(8770-8819)
[»] chr1 (3 HSPs)
chr1 (64-112)||(19778339-19778387)
chr1 (158-231)||(19778234-19778307)
chr1 (207-256)||(19778230-19778279)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 60 - 280
Target Start/End: Original strand, 11303146 - 11303366
Alignment:
Q  60 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacatannnnnnnnnnnnttcacattaaccaacaccagccaacatttcccaca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  11303146 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacataatatatatatatttcacattaaccaacaccagccaacatttcccaca 11303245  T
Q  160 acattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11303246 acattaaccaacgtcacctaaatattaaccaactttaatcaaaggttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 11303345  T
Q  260 taaccaacagatgcatcttaa 280  Q
    |||||||||||||||||||||    
T  11303346 taaccaacagatgcatcttaa 11303366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 60 - 268
Target Start/End: Complemental strand, 16108960 - 16108766
Alignment:
Q  60 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacatannnnnnnnnnnnttcacattaaccaacaccagccaacatttcccaca 159  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||            ||||||||||||||||||||||||||||           
T  16108960 aatacaactaatgatagccaacaacaacttcaacgtcatatattttccacataatatatatat--ttcacattaaccaacaccagccaacatt------- 16108870  T
Q  160 acattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 259  Q
         |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  16108869 -----aaccaacgtcacctaaatattaaccaactttaatcaaacgttaacccactttaattaaacattaacccactttaatcaaatattaatcagcatat 16108775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 46173782 - 46173878
Alignment:
Q  162 attaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacata 258  Q
    |||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46173782 attaaccaacatcacctaaacattaaccaactttaatcaaacgttaacccgctttaattaaacattaacccactttaatcaaatattaaccaacata 46173878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 60 - 280
Target Start/End: Original strand, 15534080 - 15534300
Alignment:
Q  60 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacatannnnnnnnnnnnttcacattaaccaacaccagccaacatttcccaca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  15534080 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacataatatatatatatttcacattaaccaacaccagccaacatttcccaca 15534179  T
Q  160 acattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15534180 acattaaccaacgtcacctaaatattaaccaactttaatcaaaggttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 15534279  T
Q  260 taaccaacagatgcatcttaa 280  Q
    |||||||||||||||||||||    
T  15534280 taaccaacagatgcatcttaa 15534300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 60 - 280
Target Start/End: Original strand, 14048490 - 14048696
Alignment:
Q  60 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacatannnnnnnnnnnnttcacattaaccaacaccagccaacatttcccaca 159  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||            |||||||||||||||||||||||||              
T  14048490 aatacaactaatgatagccaacaaaaacttcaacgtcatatattttccacataatacatatat--ttcacattaaccaacaccagccaac---------- 14048577  T
Q  160 acattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 259  Q
      ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14048578 --attaaccaacgtcacctaaatattaaccaactttaatcaaacgttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 14048675  T
Q  260 taaccaacagatgcatcttaa 280  Q
    ||||||||| ||||| |||||    
T  14048676 taaccaacatatgcagcttaa 14048696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 33198527 - 33198623
Alignment:
Q  162 attaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacata 258  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33198527 attaaccaacgtcacctaaatattaaccaactttaatcaaatattaacccactttaattaaacattaacccactttaatcaaatattaaccaacata 33198623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 49547940 - 49547867
Alignment:
Q  158 caacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacc 231  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49547940 caacattagccaacgtcacctaaatattaaccaactttaatcaaacgttaacccactttaattaaacattaacc 49547867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 36037880 - 36037943
Alignment:
Q  205 ttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatattaaccaaca 268  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  36037880 ttaaccaactttaattaaacattaacccactttaattaaatattaaccaacttattaaccaaca 36037943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 36037864 - 36037932
Alignment:
Q  168 caacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactt 236  Q
    |||||| |||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||| ||||    
T  36037864 caacgttacctaaatattaaccaactttaattaaacattaacccactttaattaaatattaaccaactt 36037932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 49547914 - 49547851
Alignment:
Q  205 ttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatattaaccaaca 268  Q
    |||||| |||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  49547914 ttaaccaactttaatcaaacgttaacccactttaattaaacattaaccaacatattaaccaaca 49547851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 14063160 - 14063208
Alignment:
Q  64 caactaatgatagccaacaacaacttcaacgccatatattttccacata 112  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  14063160 caactaatgatagccaacaacaacttcaacgtcgtatattttccacata 14063208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 14063242 - 14063292
Alignment:
Q  205 ttaacccactttaattaaacattaacccactttaatcaaatattaaccaac 255  Q
    |||||| || |||| |||| |||||||||||||||||||||||||||||||    
T  14063242 ttaaccaacattaaataaatattaacccactttaatcaaatattaaccaac 14063292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 60 - 280
Target Start/End: Original strand, 20261118 - 20261338
Alignment:
Q  60 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacatannnnnnnnnnnnttcacattaaccaacaccagccaacatttcccaca 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  20261118 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacataatatatatatatttcacattaaccaacaccagccaacatttcccaca 20261217  T
Q  160 acattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20261218 acattaaccaacgtcacctaaatattaaccaactttaatcaaaggttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 20261317  T
Q  260 taaccaacagatgcatcttaa 280  Q
    |||||||||||||||||||||    
T  20261318 taaccaacagatgcatcttaa 20261338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 60 - 280
Target Start/End: Original strand, 12305043 - 12305267
Alignment:
Q  60 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacatannnnnnnnnnnn----ttcacattaaccaacaccagccaacatttcc 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  12305043 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacataatatatatatatatatttcacattaaccaacaccagccaacatttcc 12305142  T
Q  156 cacaacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaac 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12305143 cacaacattaaccaacgtcacctaaatattaaccaactttaatcaaaggttaacccactttaattaaacattaacccactttaatcaaatattaaccaac 12305242  T
Q  256 atattaaccaacagatgcatcttaa 280  Q
    |||||||||||||||||||||||||    
T  12305243 atattaaccaacagatgcatcttaa 12305267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 54520818 - 54520891
Alignment:
Q  158 caacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacc 231  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  54520818 caacattagccaacgtcacctaaatattaaccaactttaatcaaacgttaacccactttaattaaacattaacc 54520891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 29544962 - 29544910
Alignment:
Q  205 ttaacccactttaattaaacattaacccactttaatcaaatattaaccaacat 257  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29544962 ttaaccaactttaattaaacattaacccactttaatcaaatattaaccaacat 29544910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 54520844 - 54520907
Alignment:
Q  205 ttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatattaaccaaca 268  Q
    |||||| |||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  54520844 ttaaccaactttaatcaaacgttaacccactttaattaaacattaaccaacatattaaccaaca 54520907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 29544978 - 29544915
Alignment:
Q  168 caacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacc 231  Q
    |||||| || ||||||||||||||||||||| |||  ||||||||||||||| ||| |||||||    
T  29544978 caacgttacttaaatattaaccaactttaattaaacattaacccactttaatcaaatattaacc 29544915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 60 - 280
Target Start/End: Original strand, 12942094 - 12942320
Alignment:
Q  60 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacatannnnnnnnnnnn------ttcacattaaccaacaccagccaacattt 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||    
T  12942094 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacataatatatatatatatatatttcacattaaccaacaccagccaacattt 12942193  T
Q  154 cccacaacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaacca 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12942194 cccacaacattaaccaacgtcgcctaaatattaaccaactttaatcaaaggttaacccactttaattaaacattaacccactttaatcaaatattaacca 12942293  T
Q  254 acatattaaccaacagatgcatcttaa 280  Q
    |||||||||||||||||||||||||||    
T  12942294 acatattaaccaacagatgcatcttaa 12942320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 60 - 268
Target Start/End: Complemental strand, 37805198 - 37805002
Alignment:
Q  60 aatacaactaatgatagccaacaacaacttcaacgccatatattttccacatannnnnnnnnnnnttcacattaaccaacaccagccaacatttcccaca 159  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||            ||||||||||||||||||||||||||||           
T  37805198 aatacaactaatgatagccaacaacaacttcaacgtcatatattttccacataatatatatatatttcacattaaccaacaccagccaacatt------- 37805106  T
Q  160 acattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacatat 259  Q
         |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  37805105 -----aaccaacgtcacctaaatattaaccaactttaatcaaacgttaacccactttaattaaacattatcccactttaatcaaatattaaccaacatat 37805011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 42242322 - 42242249
Alignment:
Q  158 caacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacc 231  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| || ||| |||||||    
T  42242322 caacattaaccaacgtcacctaaatatgaaccaactttaatcaaacgttaacccattttcatcaaatattaacc 42242249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 42242294 - 42242243
Alignment:
Q  207 aacccactttaattaaacattaacccactttaatcaaatattaaccaacata 258  Q
    |||| |||||||| |||| |||||||| ||| ||||||||||||||||||||    
T  42242294 aaccaactttaatcaaacgttaacccattttcatcaaatattaaccaacata 42242243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 29327669 - 29327769
Alignment:
Q  158 caacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacccactttaatcaaatattaaccaacat 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29327669 caacattaaccaacgtcacctaaatattaaccaactttaatcaaacgttaacccactttaattaaacattaacccactttaatcaaatattaaccaacat 29327768  T
Q  258 a 258  Q
    |    
T  29327769 a 29327769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 21322187 - 21322139
Alignment:
Q  64 caactaatgatagccaacaacaacttcaacgccatatattttccacata 112  Q
    ||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  21322187 caactaatgatagtcaacaacaacttcaacgtcatatatttttcacata 21322139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 21326775 - 21326727
Alignment:
Q  64 caactaatgatagccaacaacaacttcaacgccatatattttccacata 112  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||    
T  21326775 caactaatgatagtcaacaacaacttcaacatcatatattttccacata 21326727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 21322107 - 21322046
Alignment:
Q  158 caacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaat 219  Q
    |||||||||||||||| |  ||||||| |||| ||||||||||||  |||||||||||||||    
T  21322107 caacattaaccaacgttaaataaatatcaacccactttaatcaaatattaacccactttaat 21322046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 21326695 - 21326634
Alignment:
Q  158 caacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaat 219  Q
    |||||||||||||||| |  ||||||| |||| ||||||||||||  |||||||||||||||    
T  21326695 caacattaaccaacgttaaataaatatcaacccactttaatcaaatattaacccactttaat 21326634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 21322079 - 21322043
Alignment:
Q  207 aacccactttaattaaacattaacccactttaatcaa 243  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  21322079 aacccactttaatcaaatattaacccactttaatcaa 21322043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 243
Target Start/End: Complemental strand, 21326667 - 21326631
Alignment:
Q  207 aacccactttaattaaacattaacccactttaatcaa 243  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  21326667 aacccactttaatcaaatattaacccactttaatcaa 21326631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 8662 - 8710
Alignment:
Q  64 caactaatgatagccaacaacaacttcaacgccatatattttccacata 112  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  8662 caactaatgatagtcaacaacaacttcaacgacatatattttccacata 8710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 8742 - 8815
Alignment:
Q  158 caacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacc 231  Q
    |||||||||||||||| |  ||||||| |||| ||||||||||||  ||||||||||||||| | |||||||||    
T  8742 caacattaaccaacgttaaataaatatcaacccactttaatcaaatattaacccactttaatcatacattaacc 8815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 8770 - 8819
Alignment:
Q  207 aacccactttaattaaacattaacccactttaatcaaatattaaccaaca 256  Q
    ||||||||||||| ||| |||||||||||||||||| | |||||||||||    
T  8770 aacccactttaatcaaatattaacccactttaatcatacattaaccaaca 8819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 19778387 - 19778339
Alignment:
Q  64 caactaatgatagccaacaacaacttcaacgccatatattttccacata 112  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  19778387 caactaatgatagtcaacaacaacttcaacgacatatattttccacata 19778339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 19778307 - 19778234
Alignment:
Q  158 caacattaaccaacgtcacctaaatattaaccaactttaatcaaaagttaacccactttaattaaacattaacc 231  Q
    |||||||||||||||| |  ||||||| |||| ||||||||||||  ||||||||||||||| | |||||||||    
T  19778307 caacattaaccaacgttaaataaatatcaacccactttaatcaaatattaacccactttaatcatacattaacc 19778234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 19778279 - 19778230
Alignment:
Q  207 aacccactttaattaaacattaacccactttaatcaaatattaaccaaca 256  Q
    ||||||||||||| ||| |||||||||||||||||| | |||||||||||    
T  19778279 aacccactttaatcaaatattaacccactttaatcatacattaaccaaca 19778230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1221 times since January 2019
Visitors: 2573