View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_high_18 (Length: 218)
Name: NF0255_high_18
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 5269011 - 5268883
Alignment:
| Q |
25 |
gaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaag |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269011 |
gaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaacaacccaattatcactatcacaatcaattatggttttatcgaag |
5268912 |
T |
|
| Q |
125 |
tcgaaaactatcacaatattcttcgacat |
153 |
Q |
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|||||||||||||||||||| || ||||| |
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| T |
5268911 |
tcgaaaactatcacaatattattagacat |
5268883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 5249774 - 5249648
Alignment:
| Q |
27 |
aaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtc |
126 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| || || |
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| T |
5249774 |
aaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcatcaataacccaattatcactgtcacaatcaattatggttttatcaaaatc |
5249675 |
T |
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| Q |
127 |
gaaaactatcacaatattcttcgacat |
153 |
Q |
| |
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||||||| |||||||| || ||||| |
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| T |
5249674 |
aaaaactacaacaatattattagacat |
5249648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 5272774 - 5272900
Alignment:
| Q |
27 |
aaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtc |
126 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||| |||||||| || ||||| |
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| T |
5272774 |
aaggcattgtgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaattatcactatcacaatcaatgatggttttgtcaaagtc |
5272873 |
T |
|
| Q |
127 |
gaaaactatcacaatattcttcgacat |
153 |
Q |
| |
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|||| || |||||||| || ||||| |
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| T |
5272874 |
aaaaataataacaatattattagacat |
5272900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 5276745 - 5276835
Alignment:
| Q |
27 |
aaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggtttt |
117 |
Q |
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||||||| || ||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||| ||||||||||| || ||||| |
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| T |
5276745 |
aaggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaatcaatgatcgtttt |
5276835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 19569245 - 19569150
Alignment:
| Q |
25 |
gaaaggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatc |
120 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |
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| T |
19569245 |
gaaaggcatagtaagaaggagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcacaatcaattaaggttttatc |
19569150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 26315741 - 26315844
Alignment:
| Q |
29 |
ggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcga |
128 |
Q |
| |
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||||| ||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||| || ||||| ||||| |||||||| || ||||||| |
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| T |
26315741 |
ggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcacattcaataatggttttgtcaaagtcga |
26315840 |
T |
|
| Q |
129 |
aaac |
132 |
Q |
| |
|
|||| |
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|
| T |
26315841 |
aaac |
26315844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 43110849 - 43110952
Alignment:
| Q |
29 |
ggcatagtgggaaggagttgattgaacaaatcggtgaaacctaattcatcaagaacccaattatcactatcacaatcaattatggttttatcgaagtcga |
128 |
Q |
| |
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||||| ||||||| |||| |||||||||||| |||||||| |||||||||| |||||| |||||||| ||||| |||| ||||||||| || ||||| | |
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| T |
43110849 |
ggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcacattcaactatggttttgtcaaagtcaa |
43110948 |
T |
|
| Q |
129 |
aaac |
132 |
Q |
| |
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|||| |
|
|
| T |
43110949 |
aaac |
43110952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 43105420 - 43105463
Alignment:
| Q |
65 |
aaacctaattcatcaagaacccaattatcactatcacaatcaat |
108 |
Q |
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||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
43105420 |
aaaccaaactcatcaagaacccaattatcactatcacattcaat |
43105463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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