View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0255_high_19 (Length: 218)

Name: NF0255_high_19
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0255_high_19
NF0255_high_19
[»] chr1 (8 HSPs)
chr1 (79-218)||(52596309-52596449)
chr1 (138-203)||(22593697-22593762)
chr1 (98-167)||(11337429-11337497)
chr1 (98-167)||(11495448-11495516)
chr1 (149-203)||(15188630-15188684)
chr1 (120-174)||(28736286-28736340)
chr1 (131-211)||(2774203-2774283)
chr1 (84-168)||(21516745-21516829)
[»] chr8 (7 HSPs)
chr8 (107-211)||(32467813-32467917)
chr8 (131-210)||(35764540-35764619)
chr8 (86-153)||(21367297-21367365)
chr8 (131-209)||(41470034-41470112)
chr8 (131-216)||(14354569-14354654)
chr8 (85-214)||(24925317-24925446)
chr8 (131-211)||(24523876-24523955)
[»] chr2 (11 HSPs)
chr2 (85-216)||(27678975-27679106)
chr2 (108-218)||(42139310-42139420)
chr2 (85-178)||(44809944-44810037)
chr2 (96-216)||(38808979-38809100)
chr2 (124-208)||(15967753-15967837)
chr2 (110-182)||(18491516-18491588)
chr2 (86-157)||(35189206-35189277)
chr2 (114-179)||(15804359-15804424)
chr2 (106-153)||(25727140-25727187)
chr2 (106-152)||(17489908-17489954)
chr2 (126-211)||(13463323-13463408)
[»] chr3 (11 HSPs)
chr3 (113-211)||(37083777-37083875)
chr3 (86-218)||(9198229-9198361)
chr3 (108-182)||(11041915-11041989)
chr3 (84-146)||(32582350-32582411)
chr3 (111-215)||(32109443-32109547)
chr3 (148-211)||(32326195-32326258)
chr3 (98-154)||(25290320-25290376)
chr3 (99-146)||(33674623-33674670)
chr3 (131-182)||(44560132-44560183)
chr3 (108-178)||(32117764-32117834)
chr3 (150-216)||(38684808-38684874)
[»] chr5 (14 HSPs)
chr5 (92-178)||(31811987-31812073)
chr5 (115-211)||(22028640-22028736)
chr5 (108-201)||(29226455-29226548)
chr5 (98-182)||(31806802-31806886)
chr5 (87-182)||(13838935-13839029)
chr5 (129-216)||(16869989-16870076)
chr5 (101-211)||(6462443-6462561)
chr5 (136-207)||(3540780-3540851)
chr5 (131-182)||(28363382-28363433)
chr5 (110-179)||(17259379-17259447)
chr5 (131-211)||(2941875-2941954)
chr5 (98-177)||(32046782-32046860)
chr5 (150-211)||(4283067-4283128)
chr5 (98-146)||(6035758-6035806)
[»] chr7 (2 HSPs)
chr7 (116-210)||(12473544-12473638)
chr7 (109-180)||(42967689-42967760)
[»] chr4 (11 HSPs)
chr4 (100-205)||(20988868-20988974)
chr4 (106-203)||(23051720-23051817)
chr4 (85-173)||(44555780-44555868)
chr4 (85-157)||(30071594-30071666)
chr4 (142-208)||(21501576-21501642)
chr4 (131-216)||(1162165-1162250)
chr4 (114-182)||(39033490-39033558)
chr4 (117-168)||(50130922-50130973)
chr4 (131-165)||(24474050-24474084)
chr4 (114-154)||(30070077-30070117)
chr4 (114-182)||(41963462-41963530)
[»] chr6 (3 HSPs)
chr6 (83-211)||(9195403-9195531)
chr6 (85-153)||(29052146-29052214)
chr6 (149-210)||(2255202-2255263)
[»] scaffold0040 (1 HSPs)
scaffold0040 (120-218)||(49941-50039)
[»] scaffold0536 (1 HSPs)
scaffold0536 (89-154)||(4295-4360)
[»] scaffold0010 (1 HSPs)
scaffold0010 (131-216)||(166540-166625)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 52596449 - 52596309
Alignment:
Q  79 atactatagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaa-gacctgtttggtaaccgtcactt 177  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  52596449 atactatagggtctgtttggtaagacatgtttttgagcttatagataatgtgttataagctcatttgattaaaaaaagacctgtttggtaaccgtcattt 52596350  T
Q  178 tctcaggaactattagcttatttttactagcttaaagcggt 218  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  52596349 tctcaggaactattagcttatttttactagcttaaagcggt 52596309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 22593762 - 22593697
Alignment:
Q  138 ctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttattttta 203  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||| || |   |||||||||||||    
T  22593762 ctcattttattaaaaaagaccagtttggtaaccgtcactttctcacgagcctgtagcttattttta 22593697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 11337497 - 11337429
Alignment:
Q  98 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggta 167  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| | | |||| |||||||||||||    
T  11337497 gtaagacttatttttgagcttatagcttatgtcttataagctcatttaact-aaaacgacctgtttggta 11337429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 11495516 - 11495448
Alignment:
Q  98 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggta 167  Q
    ||||||| | ||||||||||||||||| |||| |||||||||||||| | | |||| |||||||||||||    
T  11495516 gtaagacttatttttgagcttatagcttatgtcttataagctcatttaact-aaaacgacctgtttggta 11495448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 15188684 - 15188630
Alignment:
Q  149 aaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttattttta 203  Q
    |||||| ||||||||||||| | ||||||||||| || ||| |||||||||||||    
T  15188684 aaaaaaaacctgtttggtaatcatcactttctcatgagctaatagcttattttta 15188630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 28736340 - 28736286
Alignment:
Q  120 tagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtca 174  Q
    ||||| |||| |||||||||||||||| ||||||||||| |  ||||||||||||    
T  28736340 tagcttatgtcttataagctcatttgactaaaaaagaccagcctggtaaccgtca 28736286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 2774203 - 2774283
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 211  Q
    |||||||||||| ||| ||||||||||   |||||||||||||  ||| ||| || ||  || ||||||||||||||||||    
T  2774203 ttataagctcatatgactaaaaaagactcatttggtaaccgtctttttttcatgagcttataacttatttttactagctta 2774283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 21516829 - 21516745
Alignment:
Q  84 atagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaa 168  Q
    ||||||| ||||| ||||||||  | ||||||||||| ||| ||   |||||||||| | ||| |||||||||| ||||||||||    
T  21516829 atagggtctgtttggtaagacacatatttgagcttatggcttatagcttataagctcgtatgactaaaaaagacatgtttggtaa 21516745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 32467917 - 32467813
Alignment:
Q  107 gtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttacta 206  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||  || ||  ||||||||||||||||    
T  32467917 gtttttgagcttatagcttatgtcttataagctcatttgactaaaaaagacctgattggtaaccgtcacttcctcgtgagcttatagcttatttttacta 32467818  T
Q  207 gctta 211  Q
    |||||    
T  32467817 gctta 32467813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 35764540 - 35764619
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctt 210  Q
    |||||||||||||| |||||||||||| ||| |||||||| ||||||||| | || ||  |||||||||||||| |||||    
T  35764540 ttataagctcatttaattaaaaaagacatgtctggtaaccatcactttcttatgagcttatagcttatttttacaagctt 35764619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 21367365 - 21367297
Alignment:
Q  86 agggtttgtttagtaagaca-tgtttttgagcttatagctaatgtgttataagctcatttgattaaaaa 153  Q
    ||||||||||| | |||||| | ||||||||||||||||| |||| |||||||||| | ||||||||||    
T  21367365 agggtttgtttggcaagacactttttttgagcttatagctgatgtcttataagctcgtatgattaaaaa 21367297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 41470034 - 41470112
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagct 209  Q
    |||||||||||| | | ||||||||||| |||||||||| |||| ||||||| || ||  || |||| |||||||||||    
T  41470034 ttataagctcatataactaaaaaagacccgtttggtaactgtcattttctcacgagcttataacttaattttactagct 41470112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 14354654 - 14354569
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 216  Q
    |||||||||||| ||| |||||||||||  ||||||||| |||  |||||   || ||| ||| ||||||||||||||||| ||||    
T  14354654 ttataagctcatatgactaaaaaagacccatttggtaacagtcgttttctgtcgagctaatagtttatttttactagcttatagcg 14354569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 24925317 - 24925446
Alignment:
Q  85 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcagg 184  Q
    |||||| ||||| |||||||||| ||||||| |||||  | || | |||||| ||||||||| |||||||  | |||||| |||  |||||||| | |      
T  24925317 tagggtctgtttggtaagacatgattttgagtttataatttatatcttataaactcatttgactaaaaaaaccttgtttgataagagtcactttattaca 24925416  T
Q  185 aactattagcttatttttactagcttaaag 214  Q
    ||||  || ||||||||||||| |||||||    
T  24925417 aacttataacttatttttactaacttaaag 24925446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 24523955 - 24523876
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 211  Q
    ||||||| ||||||||||||||| |||  ||||| ||||||||||||||| |  | ||  || ||||||||||||||||||    
T  24523955 ttataagttcatttgattaaaaa-gactagtttgctaaccgtcactttctaacaagcttataacttatttttactagctta 24523876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 27678975 - 27679106
Alignment:
Q  85 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcagg 184  Q
    |||||| ||||| | ||||||| ||||||||||||||||| |||| ||||||||||||||||  ||||||||||||||   |||| ||||| |||||| |    
T  27678975 tagggtgtgtttggcaagacatatttttgagcttatagcttatgtcttataagctcatttgagcaaaaaagacctgttcaataacggtcacattctcacg 27679074  T
Q  185 aactattagcttatttttactagcttaaagcg 216  Q
    | ||  ||||||||||||||||||||| ||||    
T  27679075 agcttatagcttatttttactagcttatagcg 27679106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 42139310 - 42139420
Alignment:
Q  108 tttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactag 207  Q
    |||||||||||| |||| |||| |||||||||||||||| ||||||| || ||||||||||  ||||||||||||  | ||  ||||||||||||| |||    
T  42139310 tttttgagcttaaagcttatgtcttataagctcatttgactaaaaaatacatgtttggtaattgtcactttctcacaagcttatagcttatttttattag 42139409  T
Q  208 cttaaagcggt 218  Q
    |||| ||||||    
T  42139410 cttatagcggt 42139420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 178
Target Start/End: Complemental strand, 44810037 - 44809944
Alignment:
Q  85 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcacttt 178  Q
    |||||| ||||| ||||| |||||||| |||||||||||  |||| |||||||||||||||| |||||||| || |||||||||  ||||||||    
T  44810037 tagggtctgtttggtaaggcatgttttcgagcttatagcctatgtcttataagctcatttgactaaaaaaggccggtttggtaatggtcacttt 44809944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 38809100 - 38808979
Alignment:
Q  96 tagtaagacatgtttttgagctta-tagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagc 194  Q
    |||||| ||||  ||||||||||| ||||| |||| ||||||||| | |||  | |||||||||||||||||||| ||||||||||||  | ||  ||||    
T  38809100 tagtaatacataattttgagcttaatagcttatgtcttataagcttaattggatgaaaaagacctgtttggtaactgtcactttctcacaagcttatagc 38809001  T
Q  195 ttatttttactagcttaaagcg 216  Q
    ||| ||||||||||||| ||||    
T  38809000 ttaattttactagcttatagcg 38808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 15967753 - 15967837
Alignment:
Q  124 taatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagc 208  Q
    |||||| |||||||||||||||| ||||||||||| |||||||||  |||||||||| |  | ||  ||||||||||||||||||    
T  15967753 taatgtcttataagctcatttgactaaaaaagacccgtttggtaaatgtcactttcttataagcttatagcttatttttactagc 15967837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 18491516 - 18491588
Alignment:
Q  110 tttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 182  Q
    |||||| |||||||| |||| |||||||||||||||| |||| |||||| | ||||||||||||| |||||||    
T  18491516 tttgagtttatagcttatgtcttataagctcatttgactaaacaagacccgattggtaaccgtcattttctca 18491588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 35189206 - 35189277
Alignment:
Q  86 agggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagac 157  Q
    ||||| ||||| ||||||||| ||| |||||||||  || |||| || ||||||||||||||||||||||||    
T  35189206 agggtctgtttggtaagacatatttatgagcttatttcttatgtcttgtaagctcatttgattaaaaaagac 35189277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 15804359 - 15804424
Alignment:
Q  114 agcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttc 179  Q
    ||||||||| | |||| ||||| |||||||||| ||||||||||| |||||||||  |||||||||    
T  15804359 agcttatagtttatgtcttataggctcatttgactaaaaaagaccagtttggtaattgtcactttc 15804424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 25727187 - 25727140
Alignment:
Q  106 tgtttttgagcttatagctaatgtgttataagctcatttgattaaaaa 153  Q
    |||||||||||||||| || |||| |||||||||||||||| ||||||    
T  25727187 tgtttttgagcttataacttatgttttataagctcatttgactaaaaa 25727140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 17489954 - 17489908
Alignment:
Q  106 tgtttttgagcttatagctaatgtgttataagctcatttgattaaaa 152  Q
    ||||||||||||||||||| || | |||||||||||||||| |||||    
T  17489954 tgtttttgagcttatagcttatatcttataagctcatttgactaaaa 17489908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 13463323 - 13463408
Alignment:
Q  126 atgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 211  Q
    |||| |||||||||| ||||| |||||| |||| ||||  ||| |||||||||||||  ||||  ||||||||| |||||| ||||    
T  13463323 atgtcttataagctcgtttgaataaaaaggacccgtttaataaacgtcactttctcacaaacttatagcttattcttactatctta 13463408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 37083777 - 37083875
Alignment:
Q  113 gagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 211  Q
    |||||||||||| |||| |||||||||||||||||||||||||||  ||| |||||| |||||||||||| || ||  |||||||||||||||||||||    
T  37083777 gagcttatagcttatgtcttataagctcatttgattaaaaaagacacgttaggtaactgtcactttctcacgagcttatagcttatttttactagctta 37083875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 86 - 218
Target Start/End: Complemental strand, 9198361 - 9198229
Alignment:
Q  86 agggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcagga 185  Q
    ||||| ||||| || ||| || ||||||||||||||||| || |  | ||||||| ||| | ||||||||||| |||| |||||||||||||||||| ||    
T  9198361 agggtctgtttggttagaaatatttttgagcttatagcttatatcctttaagctctttttactaaaaaagacccgtttagtaaccgtcactttctcacga 9198262  T
Q  186 actattagcttatttttactagcttaaagcggt 218  Q
     ||   |||||||||||||||||||| ||||||    
T  9198261 gcttaaagcttatttttactagcttatagcggt 9198229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 11041915 - 11041989
Alignment:
Q  108 tttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 182  Q
    ||||||| ||||||||| |||| |||||||||||||||| ||||||| | ||||||  |||| ||||||||||||    
T  11041915 tttttgaacttatagcttatgtcttataagctcatttgactaaaaaaaaactgtttcataacagtcactttctca 11041989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 32582350 - 32582411
Alignment:
Q  84 atagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttga 146  Q
    ||||||| ||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  32582350 atagggtctgtttggtaagacatgtttttga-cttatagcttatgtcttataagctcatttga 32582411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 32109443 - 32109547
Alignment:
Q  111 ttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctt 210  Q
    |||||||||||||| ||||  |||| |||||||||| |  ||||||| |||||| |||| ||||||||| || || ||  |||||||||||||  |||||    
T  32109443 ttgagcttatagcttatgtcctatatgctcatttgactcgaaaagacatgtttgataactgtcactttcccatgagcttatagcttatttttaaaagctt 32109542  T
Q  211 aaagc 215  Q
    |||||    
T  32109543 aaagc 32109547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 32326258 - 32326195
Alignment:
Q  148 taaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 211  Q
    ||||||||||| |||||||| ||||||||||||||  | ||  |||||||||||||||||||||    
T  32326258 taaaaaagacccgtttggtatccgtcactttctcacaagcttgtagcttatttttactagctta 32326195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 25290376 - 25290320
Alignment:
Q  98 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaa 154  Q
    |||||||||  |||||||||||||||| |||| ||||| |||||||||| |||||||    
T  25290376 gtaagacataattttgagcttatagcttatgtcttatatgctcatttgactaaaaaa 25290320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 33674670 - 33674623
Alignment:
Q  99 taagacatgtttttgagcttatagctaatgtgttataagctcatttga 146  Q
    ||||||||||||||||||||||| || |||| || |||||||||||||    
T  33674670 taagacatgtttttgagcttataccttatgtcttgtaagctcatttga 33674623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 44560132 - 44560183
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 182  Q
    ||||||| |||| ||| |||||||||| |||||||||||||||| |||||||    
T  44560132 ttataagttcatatgactaaaaaagacatgtttggtaaccgtcattttctca 44560183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 32117764 - 32117834
Alignment:
Q  108 tttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcacttt 178  Q
    ||||||||| ||||||| ||||  ||||||||||||| | || |||||||| | || ||||||||||||||    
T  32117764 tttttgagcatatagcttatgtcctataagctcatttaactagaaaagacccgctttgtaaccgtcacttt 32117834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 38684874 - 38684808
Alignment:
Q  150 aaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 216  Q
    ||||||| | ||||||||||||||| |||||||||| ||  ||  ||||||||||||||||| ||||    
T  38684874 aaaaagatccgtttggtaaccgtcattttctcaggagcttgtaaattatttttactagcttatagcg 38684808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 31811987 - 31812073
Alignment:
Q  92 tgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcacttt 178  Q
    ||||| ||||||||||||||| ||||||||||| |||| |||||||||||||||| ||||| ||||| ||||||||||| |||||||    
T  31811987 tgtttggtaagacatgttttttagcttatagcttatgtcttataagctcatttgactaaaacagacccgtttggtaaccttcacttt 31812073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 22028640 - 22028736
Alignment:
Q  115 gcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 211  Q
    ||||||||||  ||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||  | ||  |||||||||||||||| ||||    
T  22028640 gcttatagcttttgtcttataagctcatttgactaaaaaagacccgtttggtaaccgtcactttctcacaagcttatagcttatttttactaactta 22028736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 29226548 - 29226455
Alignment:
Q  108 tttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttt 201  Q
    ||||||||||||||||  |||| |||||  ||||||||| |||||||||| |||||| ||||||||||||||||| ||| |  |||||||||||    
T  29226548 tttttgagcttatagcatatgtcttatatactcatttgactaaaaaagacatgtttgataaccgtcactttctcatgaagtcatagcttatttt 29226455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 31806886 - 31806802
Alignment:
Q  98 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 182  Q
    |||||||||  |||||||||| ||||| |||| ||||| |||||||| ||| |||||||| |||||||||||| ||| |||||||    
T  31806886 gtaagacataattttgagcttctagcttatgtcttatatgctcattttatttaaaaagacatgtttggtaaccatcaatttctca 31806802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 13839029 - 13838935
Alignment:
Q  87 gggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 182  Q
    |||| ||||| ||| |||||||||||||||||| || | || | |||||||||||||||| ||||||| ||| |||| ||||| ||||||||||||    
T  13839029 gggtatgtttggtatgacatgtttttgagcttacagtttatctcttataagctcatttgactaaaaaaaacccgttt-gtaactgtcactttctca 13838935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 16870076 - 16869989
Alignment:
Q  129 tgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 216  Q
    |||||| ||||||||||| ||||||| |||| ||||||| |  ||||||||||| |||||  || |||||||||||||||||| ||||    
T  16870076 tgttattagctcatttgactaaaaaatacctttttggtatctatcactttctcacgaacttataccttatttttactagcttatagcg 16869989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 6462561 - 6462443
Alignment:
Q  101 agacatgtttttgagcttatagcta-------atgtgttataa-gctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactatta 192  Q
    |||||||||||||||||||||||||       |||| |||||| |||||||||| ||||||||| |  |||||||||||| ||||||||   | ||  ||    
T  6462561 agacatgtttttgagcttatagctattagcttatgtcttataaagctcatttgactaaaaaagaaccatttggtaaccgttactttctcgcaagcttata 6462462  T
Q  193 gcttatttttactagctta 211  Q
    |||||||||||||||||||    
T  6462461 gcttatttttactagctta 6462443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 207
Target Start/End: Complemental strand, 3540851 - 3540780
Alignment:
Q  136 agctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactag 207  Q
    ||||||||||||||||||| || ||||||||||||| |||||| ||| |||||  ||  |||||||||||||    
T  3540851 agctcatttgattaaaaaaaacttgtttggtaaccgccactttatcacgaacttataatttatttttactag 3540780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 28363382 - 28363433
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 182  Q
    |||||||||||||||| || ||||||| ||||||| ||||||||||||||||    
T  28363382 ttataagctcatttgactataaaagacttgtttggcaaccgtcactttctca 28363433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 17259379 - 17259447
Alignment:
Q  110 tttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttc 179  Q
    ||||||||||||||| |||| ||||||||||| |||  | ||||||||| |||||||||||||| |||||    
T  17259379 tttgagcttatagcttatgtcttataagctcaattggct-aaaaagacccgtttggtaaccgtcgctttc 17259447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 2941875 - 2941954
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 211  Q
    |||||||||||||||| ||||||| ||| |||||||||||| || ||| ||| || |   |||||||||||||||||||||    
T  2941875 ttataagctcatttgactaaaaaacacccgtttggtaaccgcca-tttgtcatgagcatatagcttatttttactagctta 2941954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 32046782 - 32046860
Alignment:
Q  98 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactt 177  Q
    |||||||||  || ||||||||||||| |||||||| ||||||||| || ||||||| | || |||||||||||| ||||    
T  32046782 gtaagacataattctgagcttatagcttatgtgttaaaagctcattagactaaaaaata-ctctttggtaaccgtgactt 32046860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 4283067 - 4283128
Alignment:
Q  150 aaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctta 211  Q
    |||||||| |||||||||||||||| | ||||| || ||  ||||||||||||||| |||||    
T  4283067 aaaaagacatgtttggtaaccgtcattctctcacgagcttatagcttatttttactggctta 4283128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 6035758 - 6035806
Alignment:
Q  98 gtaagacatgtttttgagcttatagctaatgtgttataagctcatttga 146  Q
    ||||||||| |||||||||||| |||| |||  ||||||||||||||||    
T  6035758 gtaagacatatttttgagcttacagcttatgacttataagctcatttga 6035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 12473638 - 12473544
Alignment:
Q  116 cttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctt 210  Q
    ||||||||| |||  |||||||||||||||| ||||||||||| ||||||||||||| | ||||||| || ||  ||||||||||||||||||||    
T  12473638 cttatagcttatggcttataagctcatttgactaaaaaagacccgtttggtaaccgtaattttctcatgagcttatagcttatttttactagctt 12473544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 42967689 - 42967760
Alignment:
Q  109 ttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttct 180  Q
    |||| |||||||| || |||| |||||||  |||||||||||||| |||| ||||||||||  |||||||||    
T  42967689 tttttagcttataacttatgtcttataagtccatttgattaaaaatgacccgtttggtaacaatcactttct 42967760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 205
Target Start/End: Complemental strand, 20988974 - 20988868
Alignment:
Q  100 aagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactat-tagcttat 198  Q
    |||||| ||| ||| ||||||| || |||| |||||||||||||||| ||||||||||  ||||||||||||||||||||||| || || | ||||||||    
T  20988974 aagacacgttcttgcgcttataacttatgtcttataagctcatttgactaaaaaagacacgtttggtaaccgtcactttctcatgagctttatagcttat 20988875  T
Q  199 ttttact 205  Q
    |||||||    
T  20988874 ttttact 20988868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 23051817 - 23051720
Alignment:
Q  106 tgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttattttta 203  Q
    ||||||||||||||||| | |||| |||||||| ||||||| |||||| ||||||||||||||| |||||||||||| || ||   ||||||||||||    
T  23051817 tgtttttgagcttatagtttatgtcttataagcccatttgactaaaaaggacctgtttggtaacagtcactttctcacgagcttacagcttattttta 23051720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 44555868 - 44555780
Alignment:
Q  85 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtc 173  Q
    |||||| ||||| |||||||||  |||||||||||||||| |||| || ||||||||||||| |||| |||||| ||||||||||||||    
T  44555868 tagggtctgtttggtaagacataattttgagcttatagcttatgtcttttaagctcatttgactaaataagacccgtttggtaaccgtc 44555780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 30071666 - 30071594
Alignment:
Q  85 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaagac 157  Q
    |||||| ||||| |||||||||||||||||| |||||||| ||||  ||||||||||||||  ||||||||||    
T  30071666 tagggtctgtttggtaagacatgtttttgagtttatagcttatgtcatataagctcatttggctaaaaaagac 30071594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 21501576 - 21501642
Alignment:
Q  142 tttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagc 208  Q
    ||||| |||||||||| | ||||||||| |||||||||||| || ||  ||||||||||||||||||    
T  21501576 tttgactaaaaaagacatatttggtaactgtcactttctcacgagcttatagcttatttttactagc 21501642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 1162165 - 1162250
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 216  Q
    |||||||||| ||||| |||||| |||| ||||  ||| ||||||||||||| |||||  ||||||||| |||||| |||| ||||    
T  1162165 ttataagctcgtttgaataaaaaggacccgtttaataaacgtcactttctcacgaacttatagcttattcttactatcttatagcg 1162250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 39033490 - 39033558
Alignment:
Q  114 agcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 182  Q
    |||||||| || |||| | |||||||| ||||| || |||||||| |||||||||| ||||||||||||    
T  39033490 agcttatatcttatgtctgataagctcttttgactagaaaagacccgtttggtaactgtcactttctca 39033558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 50130922 - 50130973
Alignment:
Q  117 ttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaa 168  Q
    |||||||| |||| |||||||||||||||| ||||||||| | |||||||||    
T  50130922 ttatagcttatgtcttataagctcatttgactaaaaaagaaccgtttggtaa 50130973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 24474050 - 24474084
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttgg 165  Q
    |||||||||||| ||||||||||||||||||||||    
T  24474050 ttataagctcatatgattaaaaaagacctgtttgg 24474084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 30070077 - 30070117
Alignment:
Q  114 agcttatagctaatgtgttataagctcatttgattaaaaaa 154  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  30070077 agcttatagctcatgtcttataagctcatttgactaaaaaa 30070117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 41963530 - 41963462
Alignment:
Q  114 agcttatagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctca 182  Q
    ||||||||| | |||| |||||| ||||||||| || ||||||||| |||| ||||  |||||||||||    
T  41963530 agcttatagtttatgtcttataatctcatttgactagaaaagacctatttgataacaatcactttctca 41963462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 211
Target Start/End: Original strand, 9195403 - 9195531
Alignment:
Q  83 tatagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagct-catttgattaaaaaa-gacctgtttggtaaccgtcactttct 180  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||  ||||| ||||| | ||||||||||||||| |||| ||||| |||| ||| ||||||    
T  9195403 tatatggtctgtttggtaagacatgttttagagcttatagct--tgtgtcataagtttcatttgattaaaaaaagacccgtttgataactgtctctttct 9195500  T
Q  181 caggaactattagcttatttttactagctta 211  Q
    || || ||  ||||||| |||||||||||||    
T  9195501 cacgatcttatagcttaattttactagctta 9195531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 29052146 - 29052214
Alignment:
Q  85 tagggtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaa 153  Q
    |||||| |||||  ||||||||| |||||||||||||||| |||| |||||| ||| ||||| ||||||    
T  29052146 tagggtctgtttgataagacatgcttttgagcttatagcttatgtcttataaactcctttgactaaaaa 29052214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 2255202 - 2255263
Alignment:
Q  149 aaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagctt 210  Q
    ||||||||||||||||||||| |||| |||||||   |||  ||||||||| ||||||||||    
T  2255202 aaaaaagacctgtttggtaactgtcattttctcacacacttatagcttattattactagctt 2255263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 50039 - 49941
Alignment:
Q  120 tagctaatgtgttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcggt 218  Q
    ||||| |||| |||| | ||||||||| ||||||||||| |||||||||| |||||||||||| || ||  |||||||||||||  |||||| ||||||    
T  50039 tagcttatgtcttattaactcatttgactaaaaaagacccgtttggtaacggtcactttctcacgagcttatagcttatttttaagagcttatagcggt 49941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 4295 - 4360
Alignment:
Q  89 gtttgtttagtaagacatgtttttgagcttatagctaatgtgttataagctcatttgattaaaaaa 154  Q
    |||||||| |||||||||| ||||||||| |||| | || |  ||||||||||||||| |||||||    
T  4295 gtttgtttggtaagacatgattttgagctcatagtttatatcatataagctcatttgactaaaaaa 4360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 166540 - 166625
Alignment:
Q  131 ttataagctcatttgattaaaaaagacctgtttggtaaccgtcactttctcaggaactattagcttatttttactagcttaaagcg 216  Q
    ||||| |||||||| | || |||||||||||||| |||||| |||||  ||| || ||  || |||||||||||||||||| ||||    
T  166540 ttatatgctcatttcactagaaaagacctgtttgataaccgccacttcgtcacgagcttataacttatttttactagcttatagcg 166625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1218 times since January 2019
Visitors: 2573