View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_high_4 (Length: 487)
Name: NF0255_high_4
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 25 - 487
Target Start/End: Complemental strand, 40002042 - 40001581
Alignment:
| Q |
25 |
catcacaaatatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttgggcaacttcttccttggaacagcattcggatt |
124 |
Q |
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| T |
40002042 |
catcacaaatatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttgggcaacttcttccttagaacagcattcggatt |
40001943 |
T |
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| Q |
125 |
ggtttcattggcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtccttttagcacacaaaacatgtcacc |
224 |
Q |
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| T |
40001942 |
ggtttcattggcatgcgcattgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtttttttagcacacaaaacatgtcacc |
40001843 |
T |
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| Q |
225 |
atataacacattcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaacacaacaagtgcctataattatccattttaaaaatct |
324 |
Q |
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| T |
40001842 |
atataacacattcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaacccaacaagtgcctataattatcca-tttaaaaatct |
40001744 |
T |
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| Q |
325 |
tcaaaaaccaacattctatctctctctgtgcctattattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggtct |
424 |
Q |
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| T |
40001743 |
tcaaaaaccaacattctatctctctctgtgcttattattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggtct |
40001644 |
T |
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| Q |
425 |
tctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttc |
487 |
Q |
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| T |
40001643 |
tctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttc |
40001581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 43105016 - 43104966
Alignment:
| Q |
42 |
ttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttg |
92 |
Q |
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| T |
43105016 |
ttacagatagtccaaataaaaagtcaaatagtcctaaaaataactaacttg |
43104966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 43104918 - 43104824
Alignment:
| Q |
135 |
gcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtcctt-ttagcacacaaaacatgtcaccatat |
228 |
Q |
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| T |
43104918 |
gcatgcaccatgccctactagctcagtcgaaacttatattaactaaattaatgtgttacattgttcttcttggcacacaaaacatgtcatcatat |
43104824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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