View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0255_high_5 (Length: 487)
Name: NF0255_high_5
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 82 - 303
Target Start/End: Original strand, 23922850 - 23923074
Alignment:
| Q |
82 |
gacaatagacttagtttgttgttgaggagaatggagaatagatgttacttagggttcttaatatataggcattacaatgtagtacc----nnnnnnnnag |
177 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
23922850 |
gacaatagacttattttgttgttgaggagagtggagaagagacgttacttagggttcttaatatataggcattataatgtagtaccttttttttttttag |
23922949 |
T |
|
| Q |
178 |
aaatctcaatcaaaatgagtcaatgaatgtagtaagaaataaataaagtcaccattaatattcttggnnnnnnnnggtc-aaaaaactcagttcatacca |
276 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
23922950 |
aaatctcaatcaaaatgagttaatgaatgtagtcagaaacaaataaagtcaccattaatattcttggttttttt--gtcaaaaaaactcagttcatacca |
23923047 |
T |
|
| Q |
277 |
gtaaacgtactatttcgaaaaattgcc |
303 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
23923048 |
gtaaacgtactatttcgaaaaattgcc |
23923074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 23915159 - 23915269
Alignment:
| Q |
53 |
aataggttgatgatgccattttctcttttgacaatagacttagtttgttgttgaggagaatggagaatagatgttacttagggttcttaatatataggca |
152 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
23915159 |
aataggttgaagatgccattttctcttttgacaatagacttagtttgttgttgaggagaatggagaatagacg----ttagggttcttaatttataggca |
23915254 |
T |
|
| Q |
153 |
ttacaatgtagtacc |
167 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
23915255 |
ttataatgcagtacc |
23915269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 471
Target Start/End: Original strand, 23923138 - 23923244
Alignment:
| Q |
366 |
gatgaaattaatttatataagaccaataaaagttggtcggtttccttcacaattg--nnnnnnnncttcttttggtcggtagtcatttccaattttaaaa |
463 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||| |
|
|
| T |
23923138 |
gatgtaattaatttatataagaccaataaaagttggtcggtttccttcacaattgttttttttttcttcttttggttggcagtcatttccaatttt-aaa |
23923236 |
T |
|
| Q |
464 |
ctacacta |
471 |
Q |
| |
|
|||||||| |
|
|
| T |
23923237 |
ctacacta |
23923244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 23915288 - 23915350
Alignment:
| Q |
182 |
ctcaatcaaaatgagtcaatgaatgtagtaagaaataaataaagtcaccattaatattcttgg |
244 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||||| |||| | ||||||||||||||||||| |
|
|
| T |
23915288 |
ctcagtcaaaataagtcaatgaatgtagtcagaaagaaattcattcaccattaatattcttgg |
23915350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 679 times since January 2019
Visitors: 2568