View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_high_7 (Length: 370)
Name: NF0255_high_7
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_high_7 |
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| [»] scaffold1063 (1 HSPs) |
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Alignment Details
Target: scaffold1063 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold1063
Description:
Target: scaffold1063; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 64 - 308
Target Start/End: Complemental strand, 3102 - 2855
Alignment:
| Q |
64 |
atggcatctttccataagcatcacagtatcctattgctttatccaaacctacaacatatcgtagcaacattttggttcataggctttctttaaagtgtaa |
163 |
Q |
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| T |
3102 |
atggcatctttccataagcatcacagtatcctattgcttcatccaaacctacaacatatggtagcagcattttggttcataggctttctttaaagtataa |
3003 |
T |
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| Q |
164 |
ccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacat-aagcttttgcatgtattttataca--acaaa |
260 |
Q |
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| T |
3002 |
ctcgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcccataaagcttttgcatgtattttacacaacacaaa |
2903 |
T |
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| Q |
261 |
aaatagagcatttataaatggaaaaatttatataataaagatttagtc |
308 |
Q |
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| T |
2902 |
aaatagagcatttataaatggaaaaatttatataataaagatgtagtc |
2855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 6943078 - 6943221
Alignment:
| Q |
143 |
taggctttctttaaagtgtaaccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagcttttgca |
242 |
Q |
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| T |
6943078 |
taggctttctttaaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaaacatgcacataagcttttgta |
6943177 |
T |
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| Q |
243 |
tgtattttatacaacaaaaaatagagcatttataaatggaaaaa |
286 |
Q |
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| T |
6943178 |
tgtattttacacaataaaaaatagagaatttataaatggaaaaa |
6943221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 143 - 283
Target Start/End: Original strand, 6939903 - 6940046
Alignment:
| Q |
143 |
taggctttctttaaagtgtaaccagaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagc---tttt |
239 |
Q |
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| T |
6939903 |
taggctttctttgaagtgtaacctgaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaagacatgcacatatgcttttttt |
6940002 |
T |
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| Q |
240 |
gcatgtattttatacaacaaaaaatagagcatttataaatggaa |
283 |
Q |
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| T |
6940003 |
gtatgtattttacacaagaaaaaatagagcatttacaaatggaa |
6940046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 265
Target Start/End: Complemental strand, 6787691 - 6787593
Alignment:
| Q |
167 |
gaaggatttttcaagtaattatctcatcagcggatgtatccatgaattgataaaagcatgcacataagcttttgcatgtattttatacaacaaaaaata |
265 |
Q |
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| T |
6787691 |
gaaggatttttcaagtaattatctcatcagcggatgtattcatgaattgataaaaacatgtccataagattttgcatgtattttacacaataaaaaata |
6787593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 289 - 370
Target Start/End: Complemental strand, 6787594 - 6787512
Alignment:
| Q |
289 |
tatataataaagatttagtccaatcaaaatacacattaaatgcattaag-ttccgacatacaaagatccatatgaatttttta |
370 |
Q |
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| T |
6787594 |
tatataataaaggtatagtccaatcaaaatatacattaaatgcattgagtttcacccatacaaagatccatatgaatttttta |
6787512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 6939792 - 6939870
Alignment:
| Q |
54 |
tgaagcaaacatggcatctttccataagcatcacagtatcctattgctttatccaaacctacaacatatcgtagcaaca |
132 |
Q |
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| T |
6939792 |
tgaagcaaaaatggcatctttccataagcatcacggtatccgtatgcttcatccaaacctacaatatatggtagcaaca |
6939870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 6942967 - 6943045
Alignment:
| Q |
54 |
tgaagcaaacatggcatctttccataagcatcacagtatcctattgctttatccaaacctacaacatatcgtagcaaca |
132 |
Q |
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| T |
6942967 |
tgaagcaaaaatggcatctttccataagcatcacagtatccgtatgcttcatccaaagctacaatatatggtagcaaca |
6943045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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