View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_low_1 (Length: 636)
Name: NF0255_low_1
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 95 - 636
Target Start/End: Original strand, 43409893 - 43410430
Alignment:
| Q |
95 |
acaatactttgccggaagcctaaaggacgctgcaaagagcatcggtggtaagtgacttgtaaaattcaatttcagttttaattaattaattaa----ata |
190 |
Q |
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| T |
43409893 |
acaatactttgccggaagcctaaaggacgccgcaaagagcatcggtggtaagtgacttgtaaaattcaatttcagttttaattaattaattaattaaata |
43409992 |
T |
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| Q |
191 |
aaactatgtcatggatattattatccaacaactcgatctcaatcacaatctgaaagtaattaaatatataataattttgtgatacagtgtgtcctacaac |
290 |
Q |
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| T |
43409993 |
aaactatgtcatggatattattatccaacaactcgatctcaatcacaatctgaa-gtaattaaata----ataattttgtgatacagtgtgtcctacaac |
43410087 |
T |
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| Q |
291 |
tctgaaaaggatatgcagacagcatgggattacaagatggccttcaagaaaaataaagaaggtgggccactctttaaagaagctacaacttgtgattgat |
390 |
Q |
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| T |
43410088 |
tctgaaaaggatatgcagacagcatgggattacaagatggccttcaagaaaaataaagaaggtgggccactctttaaagaagctacaacttgtgattgat |
43410187 |
T |
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| Q |
391 |
tctgttcaaggtgcagagggtgccatacagattggctctttctatgccagcttcccagagttgagcactgcaactgctaatggtggtgatggtaatgata |
490 |
Q |
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| T |
43410188 |
tctgttcaaggtgcagagggtgccatacagattggctctttctatgccagcttcccagagttgagcaatgcaactgctaatggtggtgatggtaatgat- |
43410286 |
T |
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| Q |
491 |
acaacaacaacaatagcttctataataataaccatggagatggaatagttactagtttgaaatccccaccctctgcttgcagtcagacccatgcaggaaa |
590 |
Q |
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| T |
43410287 |
--aacagcaacaatagcttctataataataaccatggagatggaatagttactagtttgaaatccccaccctctgcttgcagtcagacccatgcaggaaa |
43410384 |
T |
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| Q |
591 |
caaattacctatgactactactactgccattaaccatcatcatgtt |
636 |
Q |
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| T |
43410385 |
caaattacctatgactactactactgccattaaccatcatcatgtt |
43410430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 25531358 - 25531416
Alignment:
| Q |
274 |
acagtgtgtcctacaactctgaaaaggatatgcagacagcatgggattacaagatggcc |
332 |
Q |
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| T |
25531358 |
acagtttgtccaacaactctgaagagaatatgcagacaacatggaatttcaagatggcc |
25531416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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