View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_low_11 (Length: 359)
Name: NF0255_low_11
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 232 - 347
Target Start/End: Original strand, 2941438 - 2941553
Alignment:
| Q |
232 |
cattaacaggcggacctgaatcgaataagtaggaatcaggtgccactctatggtttagaaggaagatttgaaaggataaaccagcatccagttatgtcac |
331 |
Q |
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| T |
2941438 |
cattaacaggctgacctgaatcgaataagtaggaatcaggtgccactctatggtttagaaggaagatttgaaaggataaaccagcatccagttatgtcac |
2941537 |
T |
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| Q |
332 |
aataattgtatatttt |
347 |
Q |
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| T |
2941538 |
aataattgtatatttt |
2941553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 2941350 - 2941396
Alignment:
| Q |
82 |
acacacactatgtctctaacacctggaaattaggcttttgtgcttttg |
129 |
Q |
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| T |
2941350 |
acacacactatgtctctaacacctggaaattaggc-tttgtgcttttg |
2941396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 219
Target Start/End: Original strand, 2941393 - 2941423
Alignment:
| Q |
189 |
tttgtttcatatcttattgcttatttttaat |
219 |
Q |
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| T |
2941393 |
tttgtttcatatcttattgcttatttttaat |
2941423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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