View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0255_low_12 (Length: 354)

Name: NF0255_low_12
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0255_low_12
NF0255_low_12
[»] chr6 (5 HSPs)
chr6 (7-290)||(19305841-19306123)
chr6 (7-290)||(10122322-10122611)
chr6 (211-290)||(10126551-10126630)
chr6 (210-291)||(19310336-19310417)
chr6 (152-197)||(19310279-19310326)
[»] chr1 (9 HSPs)
chr1 (7-290)||(28244189-28244479)
chr1 (7-291)||(11476555-11476864)
chr1 (52-291)||(11318579-11318843)
chr1 (211-286)||(11471316-11471391)
chr1 (13-153)||(17431502-17431647)
chr1 (211-290)||(17430759-17430839)
chr1 (210-287)||(17431702-17431780)
chr1 (210-290)||(50017598-50017678)
chr1 (63-113)||(50017780-50017830)
[»] chr7 (3 HSPs)
chr7 (7-290)||(22489242-22489532)
chr7 (152-276)||(22492347-22492473)
chr7 (210-290)||(48944282-48944362)
[»] chr5 (7 HSPs)
chr5 (74-290)||(25383924-25384144)
chr5 (210-289)||(25379439-25379518)
chr5 (210-290)||(25484265-25484343)
chr5 (225-290)||(23231609-23231674)
chr5 (210-272)||(25482726-25482788)
chr5 (12-49)||(25383881-25383918)
chr5 (81-109)||(23231439-23231467)
[»] chr2 (4 HSPs)
chr2 (7-290)||(43159116-43159428)
chr2 (7-290)||(38250095-38250409)
chr2 (211-291)||(38255469-38255549)
chr2 (212-286)||(43154096-43154170)
[»] chr3 (3 HSPs)
chr3 (16-113)||(33862946-33863043)
chr3 (81-136)||(33862494-33862553)
chr3 (210-290)||(33862348-33862429)
[»] chr4 (5 HSPs)
chr4 (210-290)||(28167591-28167672)
chr4 (210-290)||(28166901-28166982)
chr4 (216-290)||(48796046-48796120)
chr4 (210-287)||(54362223-54362301)
chr4 (223-287)||(48792812-48792876)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 19306123 - 19305841
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcggagaaaagttgatggtgggtgg 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19306123 gcaggagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcggagaaaagttgatggtgggtgg 19306024  T
Q  107 tgggttcgtcgtacgggagaagagaagagggatgcgtttttgatttttcacttgttctctcagtcacgttctcttattctcctttaattgannnnnnnnn 206  Q
    |||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||             
T  19306023 tgggttcgtcgtacaggagaagagaagaggaatgcgttttttatttttcacttgttctcttagtcacgttctcttattctcctttaattga-tttttttt 19305925  T
Q  207 nnnaaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
       |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19305924 ttaaaaaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 19305841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 10122611 - 10122322
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcggagaaaagttgatggtgg---- 102  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||        
T  10122611 gcaggagagaaagtgaagaggaacgatggccgttggcggagaggacggcgacggcggaggtaagtgtcggcggtggcggagaaaagttgatggtgggtgg 10122512  T
Q  103 gtggtgggttcgtcgtacgggagaagagaagagggatgcgtttttgatttttcacttgttctctcagtcacgt----tctcttattctcctttaattgan 198  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| | |||||||||||||||    ||||||||||||||||||||||     
T  10122511 gtggtgggttcgtcgtactggagaagtgaagaggaatgcgtttttgatttttcac-tcttctctcagtcacgtgttctctcttattctcctttaattga- 10122414  T
Q  199 nnnnnnnnnnnaaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
               |||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10122413 tttttttttttaaaaagggtgtgccacgtggcacaccctgattggacaatgttatataacataaaatacccaatgttacacaagtggaaccc 10122322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 10126551 - 10126630
Alignment:
Q  211 aaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||| |||||| | | ||||||||||||||||||||    
T  10126551 aaaagggtgtgccacgtggcacacccttattggacaatgttatataacataaaatccactatgttacacaagtggaaccc 10126630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 19310336 - 19310417
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccct 291  Q
    ||||| |||||| ||||||||||| ||| || ||||||||||||||||| ||||||   | |||||||||||||| ||||||    
T  19310336 aaaaaaggtgtgccacgtggcacatccttattggacaatgttatataacataaaatcgactatgttacacaagtgaaaccct 19310417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 19310279 - 19310326
Alignment:
Q  152 tttcacttgttctctcagtcacgt--tctcttattctcctttaattga 197  Q
    |||||||  |||||||||||||||  ||||||||||||||||||||||    
T  19310279 tttcactccttctctcagtcacgtgttctcttattctcctttaattga 19310326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 28244479 - 28244189
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcggagaaaagttgatggtgg---- 102  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||        
T  28244479 gcaggagagaaagtgaagaggaacgatggccgttggcggagaggacagcggcgacggagggaagtgtcggcggtggcggagaaaagttgatggtgggtgg 28244380  T
Q  103 gtggtgggttcgtcgtacgggagaagagaagagggatgcgtttttgatttttcacttgttctctcagtcacgt----tctcttattctcctttaattgan 198  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||    ||||||||||||||||||||||     
T  28244379 gtggtgggttcgtcgtactggagaagagaagaggaatgcgtttttgatttttcac-tcttctctcagtcacgtgttctctcttattctcctttaattga- 28244282  T
Q  199 nnnnnnnnnnnaaaaagggtgtgtc--acgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
               |||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28244281 -ttttttttttaaaaagggtgtgccatacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 28244189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 291
Target Start/End: Original strand, 11476555 - 11476864
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcggagaaaagttgat--------g 98  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||        |    
T  11476555 gcagaagagaaagtgaagaggaacggtggccgttggcggagaggacggcggtggcggagggaagcgtcggcggtgggggagaaaagttgatggtgggtgg 11476654  T
Q  99 gtgggtggtgggttcgtcgtac-------------gggagaagagaagagggatgcgtttttgatttttcacttgttctctcagtcacgt----tctctt 181  Q
    ||||||||||||||||||||||              ||||||||||||||| ||| |||||||||||||||| | |||||||||||||||    ||||||    
T  11476655 gtgggtggtgggttcgtcgtactggagaagagaagaggagaagagaagaggaatgtgtttttgatttttcac-tcttctctcagtcacgtgttctctctt 11476753  T
Q  182 attctcctttaattg-annnnnnnnnnnnaaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacaca 280  Q
    ||||||||||||||| |             ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11476754 attctcctttaattgaatttttttttttttaaaagggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 11476853  T
Q  281 agtggaaccct 291  Q
    |||||||||||    
T  11476854 agtggaaccct 11476864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 291
Target Start/End: Original strand, 11318579 - 11318843
Alignment:
Q  52 cggcggcggcggagggaagtgtcggcggtggcggagaaaagttgatggtgggtgg--------tgggttcgtcgtacgggagaagagaagaggg------ 137  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||        |||||||||||||| |||||||||||||||           
T  11318579 cggcggaggcggagggaagcgtcggcggtgggggagaaaagttgatggtgggtgggtgggtggtgggttcgtcgtactggagaagagaagaggagaagag 11318678  T
Q  138 -------atgcgtttttgatttttcacttgttctctcagtcacgt----tctcttattctcctttaattgannnnnnnnnnnna-aaaagggtgtgtcac 225  Q
           ||| |||||||||||||||||  |||||||||||||||    ||||||||||||||||||||||              ||||||||||| ||     
T  11318679 aagaggaatgtgtttttgatttttcactc-ttctctcagtcacgtgttctctcttattctcctttaattgaatttttttttttttaaaagggtgtgccat 11318777  T
Q  226 gtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccct 291  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11318778 gtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacacaagtggaaccct 11318843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 286
Target Start/End: Complemental strand, 11471391 - 11471316
Alignment:
Q  211 aaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtgga 286  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||    
T  11471391 aaaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacacaagtgga 11471316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 17431502 - 17431647
Alignment:
Q  13 gagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcggagaaaagttgatggtgggtggtgggtt 112  Q
    ||||||| ||||||||| |||||||| |||||||||||| | |||||| ||| |||  | ||||||||||||||| | |||||||||||||||||| |||    
T  17431502 gagaaagagaagaggaaaggtggtcgatggcggagaggaggacggcggagga-ggagatatcggcggtggcggaggatagttgatggtgggtggtgagtt 17431600  T
Q  113 c----gtcgtacgggagaa-gagaagaggg-atgcgtttttgatttt 153  Q
    |     ||||| ||||||| |||||||||| ||||||||||| ||||    
T  17431601 ctgatatcgtaggggagaaggagaagagggaatgcgtttttggtttt 17431647  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 290
Target Start/End: Complemental strand, 17430839 - 17430759
Alignment:
Q  211 aaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaat-acccaatgttacacaagtggaaccc 290  Q
    |||| |||||| ||||||||||| |||||| ||||||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  17430839 aaaatggtgtgccacgtggcacatcctgattggacaatattatataacataaaatgccccaatgttacacaagtggaaccc 17430759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 17431702 - 17431780
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaat-acccaatgttacacaagtggaa 287  Q
    ||||| |||||| ||| |||||||||||||| ||||||||||||||||| ||||||  |||||| ||||||||||||||    
T  17431702 aaaaaaggtgtgccacatggcacaccctgattggacaatgttatataacataaaatgtcccaatattacacaagtggaa 17431780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 50017678 - 50017598
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
    |||||||||||| ||||||||| | ||| || ||||||||||||||||| |||||| | | |||||||||||| |||||||    
T  50017678 aaaaagggtgtgccacgtggcatatccttattggacaatgttatataacataaaatccactatgttacacaagcggaaccc 50017598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 50017830 - 50017780
Alignment:
Q  63 gagggaagtgtcggcggtggcggagaaaagttgatggtgggtggtgggttc 113  Q
    |||||| |||||||||||||||||| | |||||| ||||||||||| ||||    
T  50017830 gagggaggtgtcggcggtggcggaggatagttgaaggtgggtggtgagttc 50017780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 22489532 - 22489242
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcggagaaaagttgatggtgggtgg 106  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||| |  |||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  22489532 gcaggagagaaagtgaagaggaacggtggtcgatggtggagaggaggatggcgacggagggaggtgtcggcggtggcggagaaaag-tgatggtgggtgg 22489434  T
Q  107 tgggttc----gtcgtacgggagaagagaagagggatgcgtttttgatttttcacttgttctctcagtcac--gttctcttattctcctttaattga--n 198  Q
    |||||||    |||||| |||||||||||| |||  ||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||       
T  22489433 tgggttctgatgtcgtaggggagaagagaataggactgcgtttttgagttttcacttgttctctgagtcacgtgttctcttattctcctttaattgagtt 22489334  T
Q  199 nnnnnnnnnnnaaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
               |||||||||||| | | |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  22489333 ttttttatagaaaaaagggtgtgccgcatggcacaccctgattgaacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 22489242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 22492347 - 22492473
Alignment:
Q  152 tttcacttgttctctcagtcac--gttctcttattctcctttaattgannnnnnnnnnnnaaaaagggtgtgtcacgtggcacaccctgataggacaatg 249  Q
    ||||||| ||||||||||||||  ||||||||||||||||||||||||            |||||||||||| ||||||||||| |||||| || |||||    
T  22492347 tttcactcgttctctcagtcacatgttctcttattctcctttaattgagtttttttttttaaaaagggtgtgccacgtggcacatcctgattgggcaatg 22492446  T
Q  250 ttatataacttaaaatacccaatgtta 276  Q
    |||||||||||||||||||||||||||    
T  22492447 ttatataacttaaaatacccaatgtta 22492473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 48944362 - 48944282
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
    ||||| |||||| |||||||||||||||||  | ||||||||||||||| ||||||  |||||||||||||||||||||||    
T  48944362 aaaaaaggtgtgccacgtggcacaccctgactgaacaatgttatataacataaaatgtccaatgttacacaagtggaaccc 48944282  T

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Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 74 - 290
Target Start/End: Original strand, 25383924 - 25384144
Alignment:
Q  74 cggcggtggcggagaaaagttgatggtgggtggtgggttc----gtcgtacgggagaagagaagagggatgcgtttttgatttttcacttgttctctcag 169  Q
    ||||||||||||||||||||| ||||||||||||||||||    |||| | |||||||||||||||| |||||||||||| ||||| |||||||||||||    
T  25383924 cggcggtggcggagaaaagttaatggtgggtggtgggttctgatgtcgcaggggagaagagaagaggaatgcgtttttgagttttcgcttgttctctcag 25384023  T
Q  170 tcac--gttctcttattctcctttaattgannnnnnnnnnnnaaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatac 267  Q
    ||||  ||||| ||||||||||||||||||             ||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  25384024 tcacgtgttcttttattctcctttaattgattttttttttt--aaaagggtgtgccacgtggcacaccctgattggaccatgttatataacttaaaatac 25384121  T
Q  268 ccaatgttacacaagtggaaccc 290  Q
    |||||||||||||||||||||||    
T  25384122 ccaatgttacacaagtggaaccc 25384144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 25379518 - 25379439
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaacc 289  Q
    |||||||||||| || |||||||||||| || ||||||||||||||||| |||||| | | |||||||||||||||||||    
T  25379518 aaaaagggtgtgccatgtggcacacccttattggacaatgttatataacataaaatccactatgttacacaagtggaacc 25379439  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 25484265 - 25484343
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
    ||||||| |||| ||||||||||||||| || |||||||||||||||||  ||||| | | ||||||||||||||||||||    
T  25484265 aaaaaggatgtgccacgtggcacacccttattggacaatgttatataac--aaaatccactatgttacacaagtggaaccc 25484343  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 23231609 - 23231674
Alignment:
Q  225 cgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
    ||||| ||||| |||| |||||||||||| |||| ||||||  |||||||||||||||||||||||    
T  23231609 cgtggtacaccttgattggacaatgttatgtaacataaaatggccaatgttacacaagtggaaccc 23231674  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 25482788 - 25482726
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaat 272  Q
    |||||||||||| || |||||||| ||| || || |||||||||||||||||||||| |||||    
T  25482788 aaaaagggtgtgccatgtggcacatcctaattgggcaatgttatataacttaaaatatccaat 25482726  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 25383881 - 25383918
Alignment:
Q  12 agagaaagtgaagaggaacggtggtcgttggcggagag 49  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  25383881 agagaaagtgaagagaaacggtggtcgttggcggagag 25383918  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 23231439 - 23231467
Alignment:
Q  81 ggcggagaaaagttgatggtgggtggtgg 109  Q
    |||||||||||||||||||||||||||||    
T  23231439 ggcggagaaaagttgatggtgggtggtgg 23231467  T

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Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 43159116 - 43159428
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagg------gaagtgtcggcggtggcggagaaaagttgatggt 100  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||      |||| ||||||||||| |||||||||||||||||    
T  43159116 gcagaagagaaagtgaagaggaacggtggccgttggtggagaggacggcggcggcggaggcggagggaagcgtcggcggtgggggagaaaagttgatggt 43159215  T
Q  101 gggtgg--------tgggttcgtcgtacgggagaagagaagaggg-------------atgcgtttttgatttttcacttgttctctcagtcacgt---- 175  Q
    ||||||        |||||||||||||| |||||||||||||||              ||| |||||||||||||||||  |||||||||||||||        
T  43159216 gggtgggtgggtggtgggttcgtcgtactggagaagagaagaggagaagagaagaggaatgtgtttttgatttttcactc-ttctctcagtcacgtgttc 43159314  T
Q  176 tctcttattctcctttaattgannnnnnnnnnnnaaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgtt 275  Q
    ||||||||||||||||||||||             ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43159315 tctcttattctcctttaattgatttttttttttttaaa-gggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgtt 43159413  T
Q  276 acacaagtggaaccc 290  Q
    |||||||||||||||    
T  43159414 acacaagtggaaccc 43159428  T

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Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 38250409 - 38250095
Alignment:
Q  7 gcagcagagaaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagg------gaagtgtcggcggtggcggagaaaagttgatggt 100  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||      |||| ||||||||||| |||||||||||||||||    
T  38250409 gcagaagagaaagtgaagaggaacggtggccgttggtggagaggacggcggcggcggaggcggagggaagcgtcggcggtgggggagaaaagttgatggt 38250310  T
Q  101 gggtgg--------tgggttcgtcgtacgggagaagagaagaggg-------------atgcgtttttgatttttcacttgttctctcagtcacgt---- 175  Q
    ||||||        |||||||||||||| |||||||||||||||              ||| |||||||||||||||||  |||||||||||||||        
T  38250309 gggtgggtgggtggtgggttcgtcgtactggagaagagaagaggagaagagaagaggaatgtgtttttgatttttcactc-ttctctcagtcacgtgttc 38250211  T
Q  176 tctcttattctcctttaattgannnnnnnnnnnna-aaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgt 274  Q
    ||||||||||||||||||||||              ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38250210 tctcttattctcctttaattgaatttttttttttttaaaagggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgt 38250111  T
Q  275 tacacaagtggaaccc 290  Q
    ||||||||||||||||    
T  38250110 tacacaagtggaaccc 38250095  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 38255469 - 38255549
Alignment:
Q  211 aaaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccct 291  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||    
T  38255469 aaaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacacaagtggaaccct 38255549  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 43154170 - 43154096
Alignment:
Q  212 aaagggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtgga 286  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||    
T  43154170 aaagggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacacaagtgga 43154096  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 33862946 - 33863043
Alignment:
Q  16 aaagtgaagaggaacggtggtcgttggcggagaggacggcggcggcggagggaagtgtcggcggtggcggagaaaagttgatggtgggtggtgggttc 113  Q
    |||| |||||||||| ||||||| || | ||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  33862946 aaagagaagaggaacagtggtcgatgacagagaggaggacggcggtggagggaggtgtcggcggtggcggagaaaagttgatggtaggttgtgggttc 33863043  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 33862553 - 33862494
Alignment:
Q  81 ggcggagaaaagttgatggtgggtggtgggttc----gtcgtacgggagaagagaagagg 136  Q
    |||||||||||||||||||| ||||||||||||    |||||| ||||||||||||||||    
T  33862553 ggcggagaaaagttgatggtaggtggtgggttctgatgtcgtaggggagaagagaagagg 33862494  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 33862429 - 33862348
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataac-ttaaaatacccaatgttacacaagtggaaccc 290  Q
    |||||||||||| || ||||||||||||||  || || ||||||||||| | |||||  |||||| ||||||||||||||||    
T  33862429 aaaaagggtgtgccatgtggcacaccctgaatgggcagtgttatataacataaaaatggccaatgctacacaagtggaaccc 33862348  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 290
Target Start/End: Original strand, 28167591 - 28167672
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataac-ttaaaatacccaatgttacacaagtggaaccc 290  Q
    ||||||||||||  |||||||||||||||||  | |||||||||||||| ||||||  ||||||||||||||||||||||||    
T  28167591 aaaaagggtgtgcgacgtggcacaccctgattcgccaatgttatataacattaaaacccccaatgttacacaagtggaaccc 28167672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 290
Target Start/End: Complemental strand, 28166982 - 28166901
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataac-ttaaaatacccaatgttacacaagtggaaccc 290  Q
    ||||| |||||| ||||||||||||||||||  | |||||||||||||| ||||||  |||||||||||| |||||||||||    
T  28166982 aaaaaaggtgtgccacgtggcacaccctgattcgccaatgttatataacattaaaacccccaatgttacataagtggaaccc 28166901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 48796046 - 48796120
Alignment:
Q  216 ggtgtgtcacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaaccc 290  Q
    |||||| |||||||||||||||||| || |||||||||||| | | ||||  |||||||| ||||||||||||||    
T  48796046 ggtgtgccacgtggcacaccctgattgggcaatgttatataccatgaaatggccaatgttgcacaagtggaaccc 48796120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 54362301 - 54362223
Alignment:
Q  210 aaaaagggtgtgtcacgtggcacaccctgataggacaatgttatataac-ttaaaatacccaatgttacacaagtggaa 287  Q
    |||||||||||| || |||||||||||||||  | |||||||||||||| | ||||| |||||||||| ||||||||||    
T  54362301 aaaaagggtgtgccatgtggcacaccctgattaggcaatgttatataacataaaaatgcccaatgttatacaagtggaa 54362223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 48792876 - 48792812
Alignment:
Q  223 cacgtggcacaccctgataggacaatgttatataacttaaaatacccaatgttacacaagtggaa 287  Q
    |||||||||||||||||| || |||||||||||| | ||||||   |||||||||||||||||||    
T  48792876 cacgtggcacaccctgattgggcaatgttatataccataaaatggtcaatgttacacaagtggaa 48792812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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