View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_low_15 (Length: 346)
Name: NF0255_low_15
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 85 - 335
Target Start/End: Complemental strand, 11126582 - 11126332
Alignment:
| Q |
85 |
tgaaattcattggttgcatcatcttttacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttct |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11126582 |
tgaaattcattggttgcatcatcttttacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttct |
11126483 |
T |
|
| Q |
185 |
tcacgaaattttcgctgattttaagatcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccatgtatggcttatcatcacc |
284 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
11126482 |
tcactaaattttcgctgattttaagatcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccgtgtatggcttagcatcacc |
11126383 |
T |
|
| Q |
285 |
atataaacaagacaagaaaactccacatacccaaaatccaatactcttcat |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11126382 |
atataaacaagacaagaaaactccacatacccaaaatccaatactcttcat |
11126332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 88 - 335
Target Start/End: Original strand, 8869434 - 8869681
Alignment:
| Q |
88 |
aattcattggttgcatcatcttttacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttcttca |
187 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||| |||||| |||||||||| |
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| T |
8869434 |
aattccttggttgcatcatcttttacttcatcgccagcaacaaggcgagcaacaaatttgttcatttctttgatctcactaaagcatggcattttcttca |
8869533 |
T |
|
| Q |
188 |
cgaaattttcgctgattttaagatcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccatgtatggcttatcatcaccata |
287 |
Q |
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| T |
8869534 |
ctaacttttcactgattttaagatcaagtgtggaaactatagaattttcaaacccaccaacaatttttcttagctccatgtatggcttagcatcaccata |
8869633 |
T |
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| Q |
288 |
taaacaagacaagaaaactccacatacccaaaatccaatactcttcat |
335 |
Q |
| |
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||| ||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
8869634 |
aaaataagacaagagaactccacatacccaaaatccggtactcttcat |
8869681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 85 - 335
Target Start/End: Complemental strand, 11144097 - 11143847
Alignment:
| Q |
85 |
tgaaattcattggttgcatcatcttttacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttct |
184 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||| |
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| T |
11144097 |
tgaaattccttggttgcatcatcttttacttcatcaccagcaacaaggcgagcaacaaaattctttttctctttgatctcactaaatcatggcattttct |
11143998 |
T |
|
| Q |
185 |
tcacgaaattttcgctgattttaagatcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccatgtatggcttatcatcacc |
284 |
Q |
| |
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|||| | |||||| ||||||| ||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||| |||| | |
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| T |
11143997 |
tcactaccttttcggtgattttgagatcaagtgtggaaactatagaactttcaaaaccaccagcaatttttcttatctccatgtatggcttagtatcaac |
11143898 |
T |
|
| Q |
285 |
atataaacaagacaagaaaactccacatacccaaaatccaatactcttcat |
335 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
11143897 |
atataaacaagataagaaaactccacatacccaaaattcaatactcttcat |
11143847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 85 - 335
Target Start/End: Original strand, 8866150 - 8866402
Alignment:
| Q |
85 |
tgaaattcattggttgcat--catcttttacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggatttt |
182 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| ||||| ||||| |
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| T |
8866150 |
tgaaattccttggttgcatatcatcttttacttcatcaccagcaacaacgcgagcaacaaaattctttttctctttgatctcactaaatcatggcatttt |
8866249 |
T |
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| Q |
183 |
cttcacgaaattttcgctgattttaagatcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccatgtatggcttatcatca |
282 |
Q |
| |
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|||||| || |||||| ||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
8866250 |
cttcactaacttttcggtgattttgagatcaagtgtggaaactatagaactttcaaaaccaccagcaatttttcttagctccatgtatggcttagcatca |
8866349 |
T |
|
| Q |
283 |
ccatataaacaagacaagaaaactccacatacccaaaatccaatactcttcat |
335 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
8866350 |
acatataaacaagataagaaaactccacatacccaaaattcaatactcttcat |
8866402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 85 - 335
Target Start/End: Complemental strand, 11142358 - 11142108
Alignment:
| Q |
85 |
tgaaattcattggttgcatcatcttttacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttct |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||| || |||||||||||||||| |||||| ||||||| |
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| T |
11142358 |
tgaaattccttggttgcatcatcttttacttcatcgcctgcaacaaggcgagcaacaaatttgttcatttctttgatctcactaaagcatggcattttct |
11142259 |
T |
|
| Q |
185 |
tcacgaaattttcgctgattttaagatcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccatgtatggcttatcatcacc |
284 |
Q |
| |
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|||| | ||||| ||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
11142258 |
tcactatcttttcactgattttatgatcaagtgtggaaactatagaattttcaaacccaccaacaatttttcttagctccatgtatggcttagcatcacc |
11142159 |
T |
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| Q |
285 |
atataaacaagacaagaaaactccacatacccaaaatccaatactcttcat |
335 |
Q |
| |
|
||| || |||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
11142158 |
ataaaagcaagacaagagaactccacatacccaaaatccagtactcttcat |
11142108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 102 - 335
Target Start/End: Original strand, 10893807 - 10894040
Alignment:
| Q |
102 |
atcatcttttacttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttcttcacgaaattttcgctg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||||||| || |||| | || |
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| T |
10893807 |
atcatcttttacttcatcaccagcaacaaggcgagcaacaaaattctttttctctttgatctcactaaatcatggcattttcttcactaactttttggtg |
10893906 |
T |
|
| Q |
202 |
attttaagatcaagtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccatgtatggcttatcatcaccatataaacaagacaaga |
301 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||| || ||||| ||||||||||||| |||| |
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| T |
10893907 |
attttgagattaagtgtggaaactatagaactttcaaaaccaccagcaatttttcttagctccatgtatggcatagcatcaacatataaacaagataaga |
10894006 |
T |
|
| Q |
302 |
aaactccacatacccaaaatccaatactcttcat |
335 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
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|
| T |
10894007 |
aaactccacatacccaaaattcaatactcttcat |
10894040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 114 - 335
Target Start/End: Original strand, 11194143 - 11194364
Alignment:
| Q |
114 |
ttcatcaccagcaacaaggcgagcaacaaaattgtttatctctttgatctcactaacgcatgggattttcttcacgaaattttcgctgattttaagatca |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || |||||| |||||| ||| | |||||||||||||| |||| | |
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|
| T |
11194143 |
ttcatcaccagcaacaaggcgagtaacaaaattatttatctcttcgatctcacaaaagcatggcgttttctgcactagcttttcgctgattttgagatta |
11194242 |
T |
|
| Q |
214 |
agtgtggaaactatacaactttcaaacccaccaccaatttttcttagctccatgtatggcttatcatcaccatataaacaagacaagaaaactccacata |
313 |
Q |
| |
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|| |||||||||| || |||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11194243 |
agcatggaaactattgaattttcaaacccgccagcaatttttcttagctccatgtatggcttaacatcaccatataaacaagacaagaaaactccacata |
11194342 |
T |
|
| Q |
314 |
cccaaaatccaatactcttcat |
335 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
11194343 |
cccaaaactcaatactcttcat |
11194364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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