View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_low_20 (Length: 316)
Name: NF0255_low_20
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_20 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 40002280 - 40001976
Alignment:
| Q |
20 |
catcatcacctatattattaatttgtgtttttacca--------tccagtgagaaaaactttacttatccattcatgttaattacgtttcagatgcagct |
111 |
Q |
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| T |
40002280 |
catcttcacctatattattagtttgtgtttttatcagttcatcatcgagtgagaaaaacttcacttatccattcatgttgattacgtttcagatgcagtt |
40002181 |
T |
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| Q |
112 |
ttgcgtccacggtaattagttgatgtaaagaccttcttctagaatccagatcataaccactaacttttaggggtaaaagtctttttgaggaataatgagg |
211 |
Q |
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| T |
40002180 |
ttgcgcccacggtaattagttgatgtaaagaccttcttctagaatccagatcataaccactaactttcaggggtaaaagtctttttgaggaataatgagg |
40002081 |
T |
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| Q |
212 |
ttaggaataaattaaaagcatagttgtttacatgtagacatcacaaatatgtcatttacagatagaccaaataaaaagtcaaattgtcctataattaact |
311 |
Q |
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| T |
40002080 |
ttaggaataaattaaaagcatagttgtttacatgtagacatcacaaatatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataact |
40001981 |
T |
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| Q |
312 |
aactt |
316 |
Q |
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| T |
40001980 |
aactt |
40001976 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 43105016 - 43104967
Alignment:
| Q |
267 |
ttacagatagaccaaataaaaagtcaaattgtcctataattaactaactt |
316 |
Q |
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| T |
43105016 |
ttacagatagtccaaataaaaagtcaaatagtcctaaaaataactaactt |
43104967 |
T |
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