View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0255_low_24 (Length: 301)

Name: NF0255_low_24
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0255_low_24
NF0255_low_24
[»] chr8 (1 HSPs)
chr8 (40-301)||(40001581-40001841)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 40 - 301
Target Start/End: Complemental strand, 40001841 - 40001581
Alignment:
Q  40 tataacacattcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaacacaacaagtgcctataattatccattttaaaaatctt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  40001841 tataacacattcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaacccaacaagtgcctataattatccattt-aaaaatctt 40001743  T
Q  140 caaaaaccaacattctatctctctctgtgcctattattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggtctt 239  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40001742 caaaaaccaacattctatctctctctgtgcttattattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggtctt 40001643  T
Q  240 ctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40001642 ctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttc 40001581  T

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