View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_low_3 (Length: 546)
Name: NF0255_low_3
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 120 - 518
Target Start/End: Original strand, 41523996 - 41524394
Alignment:
| Q |
120 |
cagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatat |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41523996 |
cagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccgagcaatat |
41524095 |
T |
|
| Q |
220 |
ctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccattt |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524096 |
ctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccattt |
41524195 |
T |
|
| Q |
320 |
ctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttct |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524196 |
ctaacctcaactccagccaaaacatttttatcgccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttct |
41524295 |
T |
|
| Q |
420 |
tcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaact |
518 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
41524296 |
tcgatttcctcagctccgaagcttcatgctccaatttaccaatcatttttctcaacacaccaagttgagtattatcctccatcctcttttcattcaact |
41524394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 120 - 518
Target Start/End: Original strand, 41515045 - 41515443
Alignment:
| Q |
120 |
cagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatat |
219 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||| |
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| T |
41515045 |
cagaggcacctacactcttcaaaagtttggtatcatcctccaaccccgaaagtcttccaagcagtcctttaaactttttgtacatagacccaagcaatat |
41515144 |
T |
|
| Q |
220 |
ctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccattt |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||| |||||||||| |
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| T |
41515145 |
ctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctacttatagtttccttatatttcttcactatttccttcaattcgccattt |
41515244 |
T |
|
| Q |
320 |
ctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttct |
419 |
Q |
| |
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|||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
41515245 |
ttaacctcaaccccagccaaagcattcttatcaccctccaatacacgaaccttatttctaagcgcatcaaaagcattgccatcatctaaccatttcttct |
41515344 |
T |
|
| Q |
420 |
tcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaact |
518 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41515345 |
tcgatttcctcaactccgaaacttcatgctccaatttaccaatcattttcctcaatacaccaagttcattattatcccccatcctcttttcattcaact |
41515443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 273 - 513
Target Start/End: Original strand, 41499389 - 41499629
Alignment:
| Q |
273 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
372 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || || || || |||||||||| |||| ||||||||||||| |||||||||||| |
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|
| T |
41499389 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagccaaatcattcttatcaccctccattacacgaacctt |
41499488 |
T |
|
| Q |
373 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
472 |
Q |
| |
|
| | | | ||||| ||||||||||||||| |||||||| |||||| | ||||||| |||| ||||||||||||| |||||||||||||||| ||| |
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| T |
41499489 |
gcttcgtacctcatcatgagcattgctatcatcaaaccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctctt |
41499588 |
T |
|
| Q |
473 |
aacacaccaagttcattattatcctccatcctcttttcatt |
513 |
Q |
| |
|
| |||| ||||||||||||||||||||| | |||||||||| |
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|
| T |
41499589 |
agcacaacaagttcattattatcctccagcatcttttcatt |
41499629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 273 - 513
Target Start/End: Original strand, 41503582 - 41503822
Alignment:
| Q |
273 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
372 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || ||| || || |||||||| |||||||||||||||||| ||| ||||||| |
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|
| T |
41503582 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatcttaaggtcagccaaatcatttttatcaccctccagaacatgaacctt |
41503681 |
T |
|
| Q |
373 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
472 |
Q |
| |
|
| | |||| ||||| |||| |||||| |||||| |||| |||||| | |||| | |||| ||||||||||||| |||||||||||||||| ||| |
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|
| T |
41503682 |
gcttcgaagctcatcatgagcactgctattttctaacaattttttcttcaacctccttaactccaaaacttcatgctctaatttaccaatcatttctctt |
41503781 |
T |
|
| Q |
473 |
aacacaccaagttcattattatcctccatcctcttttcatt |
513 |
Q |
| |
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| |||| ||||||| ||||||||||||| | |||||||||| |
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| T |
41503782 |
agcacaacaagttcgttattatcctccaccatcttttcatt |
41503822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 411
Target Start/End: Original strand, 41519327 - 41519439
Alignment:
| Q |
299 |
gtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgc |
398 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||| |||| || ||| |||||||||||| |||| | | | |||| |||||| |||||| | |
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| T |
41519327 |
gtttccttcaattcgccatttttaatctcaattccagccaaagcattcttttcaacctccaatacaccaaccatgcttcgaagctcatcaagagcattac |
41519426 |
T |
|
| Q |
399 |
tatcatctaacca |
411 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41519427 |
tatcatctaacca |
41519439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 414
Target Start/End: Original strand, 41503897 - 41504074
Alignment:
| Q |
237 |
catcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagc |
336 |
Q |
| |
|
|||||||||| || || |||||||||| |||| |||||||| ||||| ||| |||| ||| |||||| ||||| |||| || || || | |||| |
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|
| T |
41503897 |
catcagccaatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagc |
41503996 |
T |
|
| Q |
337 |
caaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccattt |
414 |
Q |
| |
|
|||| ||||||| ||| |||||||||||| |||||| | |||| |||||| |||||| |||||||| |||||||| |
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|
| T |
41503997 |
caaatcatttttttcatcctccaatacaccaaccttcctttgaagctcatcaagagcatttctatcatcaaaccattt |
41504074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 41503473 - 41503548
Alignment:
| Q |
149 |
gtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaa |
224 |
Q |
| |
|
|||||||||||||| || |||| ||||||| ||||||||| ||||| ||||| | ||||||||| ||||| |||| |
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|
| T |
41503473 |
gtatcatcctccaaccttgaaactcttccagtcagtcctctgaactttttgtaaaaagacccaagtaatatatcaa |
41503548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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