View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0255_low_37 (Length: 272)

Name: NF0255_low_37
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0255_low_37
NF0255_low_37
[»] chr5 (2 HSPs)
chr5 (30-255)||(30654675-30654900)
chr5 (123-255)||(14417069-14417199)
[»] chr7 (1 HSPs)
chr7 (126-255)||(25035463-25035590)
[»] chr8 (3 HSPs)
chr8 (117-254)||(29386873-29387007)
chr8 (113-162)||(8834286-8834335)
chr8 (219-255)||(8833869-8833905)
[»] chr2 (1 HSPs)
chr2 (198-255)||(18815060-18815120)
[»] scaffold0209 (2 HSPs)
scaffold0209 (98-218)||(7432-7547)
scaffold0209 (98-218)||(20886-21001)
[»] chr1 (1 HSPs)
chr1 (87-253)||(33153343-33153513)
[»] chr3 (1 HSPs)
chr3 (200-251)||(20387893-20387945)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 30654675 - 30654900
Alignment:
Q  30 attggcatccccactgactcaaattttgtctaactttgtcgcttgtagaatgcattacaaagtcacctgttcagtatatacacgctgctgggaatagttt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  30654675 attggcatccccactgactcaaattttgtctaactttgtcgcttgtagaatgcattccaaagtgacctgttcaatatatacacgctgctgggaatagttt 30654774  T
Q  130 gcacttatggttgctgcaagctaaggggagatgagcttttctagagggcttggctggtcagatattcaatgtagttgacaaacgatgtgcatttgaatta 229  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||| ||||||||||||    
T  30654775 gcacttatggttgctgcaagctcaggggagatgagcttttctagagggcttggctggtccgatattcaacatagttgacaaacgatgcgcatttgaatta 30654874  T
Q  230 aacttgtttgatttgcttaaattagg 255  Q
    ||||||||||||||||||||||||||    
T  30654875 aacttgtttgatttgcttaaattagg 30654900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 14417199 - 14417069
Alignment:
Q  123 atagtttgcacttatggttgctgcaagctaaggggagatgagcttttctagagggcttggctggtcagatattcaatgtagttgacaaacgatgtg---c 219  Q
    |||| |||||||||||||||||||||| | |||||||||||||| |||||||||| |     ||||||| ||||| || |||||||||||||||||   |    
T  14417199 atagcttgcacttatggttgctgcaagttcaggggagatgagctcttctagagggat-----ggtcagagattcattgcagttgacaaacgatgtgtgtc 14417105  T
Q  220 atttgaattaaacttgtttgatttgcttaaattagg 255  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14417104 atttgaattaaacttgtttgatttgtttaaattagg 14417069  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 255
Target Start/End: Complemental strand, 25035590 - 25035463
Alignment:
Q  126 gtttgcacttatggttgctgcaagctaaggggagatgagcttttctagagggcttggctggtcagatattcaatgtagttgacaaacgatgtg---catt 222  Q
    |||||||||| ||||||||||||| | | || ||||||||| |||||||||| |     ||||||| ||||| || |||||| ||||||||||   ||||    
T  25035590 gtttgcacttgtggttgctgcaagttcaaggaagatgagctcttctagagggat-----ggtcagagattcagtgcagttgataaacgatgtgtgtcatt 25035496  T
Q  223 tgaattaaacttgtttgatttgcttaaattagg 255  Q
    | |||||||||||||||||||| ||||||||||    
T  25035495 taaattaaacttgtttgatttgtttaaattagg 25035463  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 29387007 - 29386873
Alignment:
Q  117 ctgggaatagtttgcacttatggttgctgcaagctaaggggagatgagcttttctagagggcttggctggtcagatattcaatgtagttgacaaacgatg 216  Q
    ||||| ||||||||||||||||||||||||||| | | ||||||||||||||||      | |||| | |  ||| ||||| | | |||||||  |||||    
T  29387007 ctgggcatagtttgcacttatggttgctgcaagtttaagggagatgagcttttc------gtttgggttggtagagattcactatggttgacattcgatg 29386914  T
Q  217 tg---catttgaattaaacttgtttgatttgcttaaattag 254  Q
    ||   |||||||||| |||||||||||||||||||||||||    
T  29386913 tgtgtcatttgaattgaacttgtttgatttgcttaaattag 29386873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 8834335 - 8834286
Alignment:
Q  113 gctgctgggaatagtttgcacttatggttgctgcaagctaaggggagatg 162  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||||||||    
T  8834335 gctgctgggcatagtttgcacttatggttgctgcaagtttaggggagatg 8834286  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 8833905 - 8833869
Alignment:
Q  219 catttgaattaaacttgtttgatttgcttaaattagg 255  Q
    |||||||||||||||||||||||||||||||||||||    
T  8833905 catttgaattaaacttgtttgatttgcttaaattagg 8833869  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 18815120 - 18815060
Alignment:
Q  198 atgtagttgacaaacgatgtg---catttgaattaaacttgtttgatttgcttaaattagg 255  Q
    |||||||||||||  ||||||   |||||||||||||||||||||||||||||||||||||    
T  18815120 atgtagttgacaatggatgtgtgtcatttgaattaaacttgtttgatttgcttaaattagg 18815060  T

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Target: scaffold0209 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 7432 - 7547
Alignment:
Q  98 gttcagtatatacacgctgctgggaatagtttgcacttatggttgctgcaagctaaggggagatgagcttttctagagggcttggctggtcagatattca 197  Q
    ||||||| |||||  ||||||||| ||||||||||||||||||||||||||| | | |||||| | ||| ||||  ||     ||||||||||| ||||     
T  7432 gttcagtctatacgtgctgctgggcatagtttgcacttatggttgctgcaagttcaagggagacgtgctcttctctag-----ggctggtcagagattcg 7526  T
Q  198 atgtagttgacaaacgatgtg 218  Q
    |||| ||||||| ||||||||    
T  7527 atgtggttgacatacgatgtg 7547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 20886 - 21001
Alignment:
Q  98 gttcagtatatacacgctgctgggaatagtttgcacttatggttgctgcaagctaaggggagatgagcttttctagagggcttggctggtcagatattca 197  Q
    ||||||| |||||  ||||||||| ||||||||||||||||||||||||||| | | |||||| | ||| ||||  ||     ||||||||||| ||||     
T  20886 gttcagtctatacgtgctgctgggcatagtttgcacttatggttgctgcaagttcaagggagacgtgctcttctctag-----ggctggtcagagattcg 20980  T
Q  198 atgtagttgacaaacgatgtg 218  Q
    |||| ||||||| ||||||||    
T  20981 atgtggttgacatacgatgtg 21001  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 253
Target Start/End: Original strand, 33153343 - 33153513
Alignment:
Q  87 caaagtcacctgttcagtatatacacgctgctgggaatagtttgcacttatggttgctgcaagctaaggggagatgagcttttc--tagagggcttggct 184  Q
    |||| ||||| ||||||||||||  || || |||  ||||||||| |||||||||||| |||| | |||||||||||||| |||  ||||| || ||| |    
T  33153343 caaaatcacccgttcagtatatatgcgttgttggttatagtttgcgcttatggttgcttcaagttcaggggagatgagctcttctatagagagc-tggtt 33153441  T
Q  185 ggtcagatattcaatgtagttgacaaacgatgtg---catttgaattaaacttgtttgatttgcttaaatta 253  Q
     || |   ||||| ||||||||||| |  |||||   || |||||||||| |||||||||||||||||||||    
T  33153442 agtgaatgattcactgtagttgacatataatgtgtgtcagttgaattaaatttgtttgatttgcttaaatta 33153513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 20387893 - 20387945
Alignment:
Q  200 gtagttgacaaacgatgtg-catttgaattaaacttgtttgatttgcttaaat 251  Q
    |||||||||| | |||||| ||||||||||||||||||||||||| |||||||    
T  20387893 gtagttgacataggatgtgtcatttgaattaaacttgtttgatttacttaaat 20387945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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