View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_low_40 (Length: 261)
Name: NF0255_low_40
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 8233306 - 8233482
Alignment:
| Q |
48 |
atatatgagctaggtgcaaggaggattggagtattcaatgcaccaccaattgggtgtttgccatttcagagaacagctgcaggaggaatagaaagaagaa |
147 |
Q |
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| T |
8233306 |
atatatgagctaggtgcaaggaggattggagtattcaatgcaccaccaattgggtgtttgccatttcagagaacagctgcaggaggaatagaaagaagaa |
8233405 |
T |
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| Q |
148 |
ttgtagttgaatacaatgaagcagtagaattatacaacagtaaattgtcaaaggggttagcttcttttaaccagaat |
224 |
Q |
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| T |
8233406 |
ttgtagttgaatacaatgaagcagtagaattatacaacagtaaattgtcaaaggggttagcttcttttaaccagaat |
8233482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 8254094 - 8254174
Alignment:
| Q |
57 |
ctaggtgcaaggaggattggagtattcaatgcaccaccaattgggtgtttgccatttcagagaacagctgcaggaggaata |
137 |
Q |
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| T |
8254094 |
ctaggtgcaaggaggataggagtattcaatgtaccaccaattgggtgcgtgccgtttcagagaacagtggccggaggaata |
8254174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 8244522 - 8244587
Alignment:
| Q |
57 |
ctaggtgcaaggaggattggagtattcaatgcaccaccaattgggtgtttgccatttcagagaaca |
122 |
Q |
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| T |
8244522 |
ctaggtgcaaggaggataggagtatttaatgcaccaccaatggggtgtgtaccttttcagagaaca |
8244587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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