View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0255_low_47 (Length: 216)
Name: NF0255_low_47
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 40001710 - 40001525
Alignment:
| Q |
13 |
attattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggtcttctgcctatgattttcagagtaataagaaaaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40001710 |
attattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggtcttctgcctatgattttcagagtaataagaaaaac |
40001611 |
T |
|
| Q |
113 |
aaaaagtcgcagaaaatataaatgtctttcatcaggatgtgctctacgtaacaacgatttttaccatgaaatcgatcaagggtact |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40001610 |
aaaaagtcgcagaaaatataaatgtctttcatcaggatgtgctctacgtaacaacgatttttaccatgaaatcgatcaagggtact |
40001525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University