View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0255_low_5 (Length: 502)

Name: NF0255_low_5
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0255_low_5
NF0255_low_5
[»] chr8 (6 HSPs)
chr8 (79-455)||(8578385-8578761)
chr8 (209-311)||(8603608-8603710)
chr8 (273-311)||(35869744-35869782)
chr8 (273-321)||(12972753-12972801)
chr8 (222-268)||(6509328-6509374)
chr8 (276-321)||(34563147-34563192)
[»] chr7 (7 HSPs)
chr7 (208-282)||(514752-514826)
chr7 (197-265)||(39505958-39506026)
chr7 (276-309)||(26030895-26030928)
chr7 (273-321)||(7100742-7100790)
chr7 (273-313)||(18749935-18749975)
chr7 (287-319)||(30133950-30133982)
chr7 (283-315)||(31751870-31751902)
[»] chr4 (6 HSPs)
chr4 (273-311)||(24443945-24443983)
chr4 (275-322)||(4471067-4471114)
chr4 (213-267)||(3175951-3176005)
chr4 (221-266)||(29263371-29263416)
chr4 (273-321)||(485978-486026)
chr4 (273-321)||(46053597-46053645)
[»] scaffold0085 (1 HSPs)
scaffold0085 (281-321)||(26174-26214)
[»] chr3 (6 HSPs)
chr3 (209-260)||(44284092-44284143)
chr3 (273-321)||(29094278-29094326)
chr3 (273-311)||(28881833-28881871)
chr3 (209-258)||(53848075-53848124)
chr3 (222-266)||(24158528-24158572)
chr3 (194-262)||(30923895-30923963)
[»] chr6 (5 HSPs)
chr6 (223-268)||(33067157-33067202)
chr6 (282-321)||(4247218-4247257)
chr6 (275-321)||(21919971-21920017)
chr6 (273-310)||(31668810-31668847)
chr6 (273-321)||(31337920-31337968)
[»] chr5 (13 HSPs)
chr5 (284-320)||(8472007-8472043)
chr5 (273-321)||(26516195-26516243)
chr5 (275-319)||(31687924-31687968)
chr5 (221-265)||(40205098-40205142)
chr5 (273-323)||(6738532-6738582)
chr5 (221-267)||(28409389-28409435)
chr5 (276-321)||(912995-913040)
chr5 (194-267)||(4855698-4855771)
chr5 (273-318)||(20982260-20982305)
chr5 (273-322)||(38819700-38819749)
chr5 (282-322)||(6725133-6725173)
chr5 (273-321)||(14716595-14716643)
chr5 (273-321)||(23999053-23999101)
[»] chr2 (11 HSPs)
chr2 (221-260)||(43591534-43591573)
chr2 (222-268)||(9878707-9878753)
chr2 (285-323)||(29419801-29419839)
chr2 (274-319)||(19333411-19333456)
chr2 (282-323)||(42817510-42817551)
chr2 (273-321)||(2400053-2400101)
chr2 (263-307)||(9404511-9404555)
chr2 (273-309)||(34339032-34339068)
chr2 (265-301)||(37053511-37053547)
chr2 (196-268)||(39983341-39983413)
chr2 (282-310)||(43965264-43965292)
[»] scaffold0020 (1 HSPs)
scaffold0020 (194-267)||(159970-160043)
[»] chr1 (1 HSPs)
chr1 (221-258)||(4699639-4699676)
[»] scaffold0024 (1 HSPs)
scaffold0024 (273-321)||(27473-27521)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 79 - 455
Target Start/End: Complemental strand, 8578761 - 8578385
Alignment:
Q  79 ataacctataaacacaacatagggagataaaattgttagcattcaaattcattgatccaaactacaaaaccaattctgcctagtactgcagattgcttag 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8578761 ataacctataaacacaacatagggagataaaattgttagcattcaaattcattgatccaaactacaaaaccaattctgcccagtactgcagattgcttag 8578662  T
Q  179 ctatatnnnnnnncattatgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttatagtctgtacata 278  Q
    ||||||       ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8578661 ctatataaaaaaacattatgacatgtctagaagctattttcggcttatttctacaagctctccgggatagcttatgaaaacagcttatagtctgtacata 8578562  T
Q  279 agaacttatatgataagtgcttatgctataagcatttaattaaacattttgaaacaggttttaaacacagaagaacaaacaaaacacactatcatggaag 378  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578561 agcacttatatgataagtgcttatgctataagcatttaattgaacattttgaaacaggttttaaacacagaagaacaaacaaaacacactatcatggaag 8578462  T
Q  379 caaaaacaataatgaagaagaacgaggcagcgataccttagattttctgaaaagaatgttcagaaattcaaaaggat 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578461 caaaaacaataatgaagaagaacgaggcagcgataccttagattttctgaaaagaatgttcagaaattcaaaaggat 8578385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 8603710 - 8603608
Alignment:
Q  209 aagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttatagtctgtacataagaacttatatgataagtgcttatgctata 308  Q
    ||||||||| | ||| ||||||||||||||||| ||||| |||||| ||| | |||||||| | |||||||| ||||||||| |||||||||||||||||    
T  8603710 aagctattttccgctcatttctacaagctctccaggataacttatgcaaatagcttatagtttatacataagcacttatatggtaagtgcttatgctata 8603611  T
Q  309 agc 311  Q
    |||    
T  8603610 agc 8603608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 35869782 - 35869744
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagc 311  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35869782 tacataagaacttatatgataagtgcttatgctataagc 35869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 12972801 - 12972753
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||| ||||||||||||| ||||||||||||||||  ||||||||    
T  12972801 tacataagcacttatatgataaatgcttatgctataagcgcttaattaa 12972753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 6509328 - 6509374
Alignment:
Q  222 cttatttctacaagctctccgggatagcttatgaaaacaccttatag 268  Q
    |||||||| | ||||||||| |||||||||||||||||| |||||||    
T  6509328 cttatttcaataagctctccaggatagcttatgaaaacagcttatag 6509374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 34563192 - 34563147
Alignment:
Q  276 ataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    ||||| ||||||||||||| || ||||||||||||| |||||||||    
T  34563192 ataagcacttatatgataaatgtttatgctataagcgtttaattaa 34563147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 514826 - 514752
Alignment:
Q  208 gaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttatagtctgtacataagaa 282  Q
    |||| ||||| | ||||||||  ||||||||||| |||||||||||||||||| |||||||  ||||||||||||    
T  514826 gaagttattttcagcttattttgacaagctctccaggatagcttatgaaaacagcttataggttgtacataagaa 514752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 39506026 - 39505958
Alignment:
Q  197 tgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacacctta 265  Q
    |||||||||| |||||||||| | ||||||||| | || |||||| | |||||||||||||||| ||||    
T  39506026 tgacatgtctggaagctattttcagcttatttccataaactctccagaatagcttatgaaaacaactta 39505958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 309
Target Start/End: Complemental strand, 26030928 - 26030895
Alignment:
Q  276 ataagaacttatatgataagtgcttatgctataa 309  Q
    ||||| ||||||||||||||||||||||||||||    
T  26030928 ataagtacttatatgataagtgcttatgctataa 26030895  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 7100742 - 7100790
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||| ||| |||||||||||||  |||||| ||||||||||||||||||    
T  7100742 tacacaagtacttatatgataaacgcttatactataagcatttaattaa 7100790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 18749935 - 18749975
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcat 313  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  18749935 tacacaagtacttatatgataagagcttatgctataagcat 18749975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 30133982 - 30133950
Alignment:
Q  287 tatgataagtgcttatgctataagcatttaatt 319  Q
    ||||||||| |||||||||||||||||||||||    
T  30133982 tatgataagcgcttatgctataagcatttaatt 30133950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 315
Target Start/End: Original strand, 31751870 - 31751902
Alignment:
Q  283 cttatatgataagtgcttatgctataagcattt 315  Q
    ||||||||||||||| |||||||||||||||||    
T  31751870 cttatatgataagtgattatgctataagcattt 31751902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 24443983 - 24443945
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagc 311  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24443983 tacataagaacttatatgataagtgcttatgctataagc 24443945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 4471114 - 4471067
Alignment:
Q  275 cataagaacttatatgataagtgcttatgctataagcatttaattaaa 322  Q
    |||||| |||||||| |||| ||||||||||||||||| |||||||||    
T  4471114 cataagcacttatataataattgcttatgctataagcagttaattaaa 4471067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 3176005 - 3175951
Alignment:
Q  213 tatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttata 267  Q
    ||||| || ||||||||||||||| || | |||||||||||||||||| ||||||    
T  3176005 tattttcgacttatttctacaagcccttcaggatagcttatgaaaacagcttata 3175951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 29263416 - 29263371
Alignment:
Q  221 gcttatttctacaagctctccgggatagcttatgaaaacaccttat 266  Q
    ||||||||| ||||||||| | |||||||||||||||||| |||||    
T  29263416 gcttatttccacaagctctgcaggatagcttatgaaaacaacttat 29263371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 486026 - 485978
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||| |||| ||||||||| |||||||||||||||  ||||||||    
T  486026 tacataagcacttttatgataagcgcttatgctataagcgcttaattaa 485978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 46053645 - 46053597
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||| ||||||||||||||| || |||||||||||  ||||||||    
T  46053645 tacataagtacttatatgataagtactcatgctataagcgcttaattaa 46053597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 26174 - 26214
Alignment:
Q  281 aacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  26174 aacttatatgataagtgcttatgctataagcacttaattaa 26214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 44284092 - 44284143
Alignment:
Q  209 aagctatttccggcttatttctacaagctctccgggatagcttatgaaaaca 260  Q
    ||||||||| | ||||||||||| ||||||||| ||||||||||||||||||    
T  44284092 aagctattttcagcttatttctataagctctccaggatagcttatgaaaaca 44284143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 29094326 - 29094278
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||  |||||||||||||||| ||||||||||||| |||||||||    
T  29094326 tacataaacacttatatgataagtgtttatgctataagcgtttaattaa 29094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 28881833 - 28881871
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagc 311  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  28881833 tacataagagcttatatgataagttcttatgctataagc 28881871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 53848075 - 53848124
Alignment:
Q  209 aagctatttccggcttatttctacaagctctccgggatagcttatgaaaa 258  Q
    ||||| ||| ||||||||||||| |||||||| ||||||| |||||||||    
T  53848075 aagctgttttcggcttatttctataagctctctgggatagtttatgaaaa 53848124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 24158528 - 24158572
Alignment:
Q  222 cttatttctacaagctctccgggatagcttatgaaaacaccttat 266  Q
    |||||||| | ||||||||| |||||||||||||||||| |||||    
T  24158528 cttatttccataagctctccaggatagcttatgaaaacagcttat 24158572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 30923895 - 30923963
Alignment:
Q  194 ttatgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacacc 262  Q
    |||||||||||||  ||||| ||| | ||||||||||| || |||||  |||||| |||||||||||||    
T  30923895 ttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttatgaaaacacc 30923963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 33067202 - 33067157
Alignment:
Q  223 ttatttctacaagctctccgggatagcttatgaaaacaccttatag 268  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||    
T  33067202 ttatttctacaagctctccaagatagcttatgaaaacaacttatag 33067157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 321
Target Start/End: Original strand, 4247218 - 4247257
Alignment:
Q  282 acttatatgataagtgcttatgctataagcatttaattaa 321  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  4247218 acttatatgataagtacttatgctataagcacttaattaa 4247257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 21920017 - 21919971
Alignment:
Q  275 cataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||| ||||||||||||||| ||||||||||||||  ||||||||    
T  21920017 cataagcacttatatgataagtacttatgctataagcgcttaattaa 21919971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 31668810 - 31668847
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataag 310  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  31668810 tacataagcacttatatgataattgcttatgctataag 31668847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 31337968 - 31337920
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||| |||||||  ||||| ||||||||||||| |||||||||||    
T  31337968 tacataagtacttatacaataagcgcttatgctataaacatttaattaa 31337920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 320
Target Start/End: Complemental strand, 8472043 - 8472007
Alignment:
Q  284 ttatatgataagtgcttatgctataagcatttaatta 320  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8472043 ttatatgataagtgcttatgctaaaagcatttaatta 8472007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 26516243 - 26516195
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||| |||||||||||||| |||||||||||||||  ||||||||    
T  26516243 tacataagcacttatatgataagcgcttatgctataagcgcttaattaa 26516195  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 31687968 - 31687924
Alignment:
Q  275 cataagaacttatatgataagtgcttatgctataagcatttaatt 319  Q
    |||||| |||||||||||||| || ||||||||||||||||||||    
T  31687968 cataagcacttatatgataagcgcctatgctataagcatttaatt 31687924  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 40205098 - 40205142
Alignment:
Q  221 gcttatttctacaagctctccgggatagcttatgaaaacacctta 265  Q
    ||||||||||| ||||||||| |||||||||||||||||| ||||    
T  40205098 gcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 323
Target Start/End: Original strand, 6738532 - 6738582
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaaac 323  Q
    |||||||| |||||||||||||||| ||||||||||| |  ||||||||||    
T  6738532 tacataagtacttatatgataagtgtttatgctataaactcttaattaaac 6738582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 267
Target Start/End: Original strand, 28409389 - 28409435
Alignment:
Q  221 gcttatttctacaagctctccgggatagcttatgaaaacaccttata 267  Q
    ||||||||||||||| ||||||||||||||||| |||| | ||||||    
T  28409389 gcttatttctacaagttctccgggatagcttataaaaatagcttata 28409435  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 321
Target Start/End: Original strand, 912995 - 913040
Alignment:
Q  276 ataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    ||||| |||||||||||||||| ||||  |||||||||||||||||    
T  912995 ataagtacttatatgataagtgtttatagtataagcatttaattaa 913040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 4855771 - 4855698
Alignment:
Q  194 ttatgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttata 267  Q
    |||||||||||   |||||| ||| ||||||||||||  |||||||  ||||||| ||||||||||| ||||||    
T  4855771 ttatgacatgttcagaagctgttttcggcttatttctgtaagctctttgggatagtttatgaaaacaacttata 4855698  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 20982260 - 20982305
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaat 318  Q
    |||||||| ||||||||||||||  ||||||||||||||| |||||    
T  20982260 tacataagcacttatatgataagcacttatgctataagcacttaat 20982305  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 38819700 - 38819749
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaaa 322  Q
    ||||||||  |||||||||||||||||||||| ||||  |||||||||||    
T  38819700 tacataagcccttatatgataagtgcttatgccataaaaatttaattaaa 38819749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 6725173 - 6725133
Alignment:
Q  282 acttatatgataagtgcttatgctataagcatttaattaaa 322  Q
    ||||||||||||||  ||||||||||||||| |||||||||    
T  6725173 acttatatgataagcacttatgctataagcacttaattaaa 6725133  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 14716595 - 14716643
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||| |||||||||| || | ||||||||||||||| ||||||||    
T  14716595 tacataagcacttatatgacaaatccttatgctataagcacttaattaa 14716643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 23999101 - 23999053
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||| ||| ||||||||||||||  ||||| ||||||||||||||||||    
T  23999101 tacacaagcacttatatgataagcccttattctataagcatttaattaa 23999053  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 260
Target Start/End: Original strand, 43591534 - 43591573
Alignment:
Q  221 gcttatttctacaagctctccgggatagcttatgaaaaca 260  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  43591534 gcttatttccacaagctcttcgggatagcttatgaaaaca 43591573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 9878707 - 9878753
Alignment:
Q  222 cttatttctacaagctctccgggatagcttatgaaaacaccttatag 268  Q
    ||||||||| ||||||||||||||||||  ||||||||| |||||||    
T  9878707 cttatttcttcaagctctccgggatagcgaatgaaaacaacttatag 9878753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 29419839 - 29419801
Alignment:
Q  285 tatatgataagtgcttatgctataagcatttaattaaac 323  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  29419839 tatatgataagtttttatgctataagcatttaattaaac 29419801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 19333411 - 19333456
Alignment:
Q  274 acataagaacttatatgataagtgcttatgctataagcatttaatt 319  Q
    ||||||| |||||| || |||||||||||||||||||| |||||||    
T  19333411 acataagcacttatgtggtaagtgcttatgctataagcgtttaatt 19333456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 42817510 - 42817551
Alignment:
Q  282 acttatatgataagtgcttatgctataagcatttaattaaac 323  Q
    |||||||||||||  |||||||||||||||| ||||||||||    
T  42817510 acttatatgataaacgcttatgctataagcacttaattaaac 42817551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 2400101 - 2400053
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||| ||||||||||||| || |||||| |||| |||||||||||    
T  2400101 tacataagcacttatatgataattgtttatgccataaacatttaattaa 2400053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 9404555 - 9404511
Alignment:
Q  263 ttatagtctgtacataagaacttatatgataagtgcttatgctat 307  Q
    ||||||| | |||||||| |||||||||||||||| |||||||||    
T  9404555 ttatagtttatacataagcacttatatgataagtgtttatgctat 9404511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 309
Target Start/End: Complemental strand, 34339068 - 34339032
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataa 309  Q
    |||||||| |||||||||||||||| |||||||||||    
T  34339068 tacataagcacttatatgataagtgtttatgctataa 34339032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 37053547 - 37053511
Alignment:
Q  265 atagtctgtacataagaacttatatgataagtgctta 301  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  37053547 atagtctatacataagcacttatatgataagtgctta 37053511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 39983413 - 39983341
Alignment:
Q  196 atgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttatag 268  Q
    |||||||||||  ||||||||| | | ||||||  |  |||||||| |||||||||||||||||| |||||||    
T  39983413 atgacatgtctataagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatag 39983341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 43965264 - 43965292
Alignment:
Q  282 acttatatgataagtgcttatgctataag 310  Q
    |||||||||||||||||||||||||||||    
T  43965264 acttatatgataagtgcttatgctataag 43965292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 267
Target Start/End: Original strand, 159970 - 160043
Alignment:
Q  194 ttatgacatgtcttgaagctatttccggcttatttctacaagctctccgggatagcttatgaaaacaccttata 267  Q
    |||||||||||||  ||||  ||| | ||||||||| |||||||||   |||||||||||||||||| ||||||    
T  159970 ttatgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttatgaaaacatcttata 160043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 4699639 - 4699676
Alignment:
Q  221 gcttatttctacaagctctccgggatagcttatgaaaa 258  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  4699639 gcttatttctataagctctccgggatagtttatgaaaa 4699676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 27521 - 27473
Alignment:
Q  273 tacataagaacttatatgataagtgcttatgctataagcatttaattaa 321  Q
    |||||||| ||||| |||||||| ||||||||||||||| |||| ||||    
T  27521 tacataagcacttacatgataagagcttatgctataagcgtttatttaa 27473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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