View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_low_8 (Length: 484)
Name: NF0255_low_8
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 484
Target Start/End: Complemental strand, 40002044 - 40001581
Alignment:
| Q |
20 |
gacatcatcaatatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttgggcaacttcttccttggaacagcattcgga |
119 |
Q |
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| T |
40002044 |
gacatcacaaatatgtcatttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttgggcaacttcttccttagaacagcattcgga |
40001945 |
T |
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| Q |
120 |
ttggtttcattggcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtccttttagcacacaaaacatgtca |
219 |
Q |
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| T |
40001944 |
ttggtttcattggcatgcgcattgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtttttttagcacacaaaacatgtca |
40001845 |
T |
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| Q |
220 |
ccatataacacattcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaacacaacaagtgcctataattatccattttaaaaat |
319 |
Q |
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| T |
40001844 |
ccatataacacattcatatataaatttatacttgtataaaaataataaaatcgaaactcacctaacccaacaagtgcctataattatcca-tttaaaaat |
40001746 |
T |
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| Q |
320 |
cttcaaaaaccaacattctatctctctctgtgcctattattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggt |
419 |
Q |
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| T |
40001745 |
cttcaaaaaccaacattctatctctctctgtgcttattattcttcaagaacaaaaaggaaggaattaaggttgtgaattgtgatacatattatggagggt |
40001646 |
T |
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| Q |
420 |
cttctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttc |
484 |
Q |
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| T |
40001645 |
cttctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttc |
40001581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 43105016 - 43104966
Alignment:
| Q |
39 |
ttacagatagaccaaataaaaagtcaaattgtcctaaaaataactaacttg |
89 |
Q |
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| T |
43105016 |
ttacagatagtccaaataaaaagtcaaatagtcctaaaaataactaacttg |
43104966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 43104918 - 43104824
Alignment:
| Q |
132 |
gcatgcgccttgccctgctagcccagtcaaaactcatattaactaaattaatatgcttcattgtcctt-ttagcacacaaaacatgtcaccatat |
225 |
Q |
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| T |
43104918 |
gcatgcaccatgccctactagctcagtcgaaacttatattaactaaattaatgtgttacattgttcttcttggcacacaaaacatgtcatcatat |
43104824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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