View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0255_low_9 (Length: 466)
Name: NF0255_low_9
Description: NF0255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0255_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 220 - 465
Target Start/End: Original strand, 12691213 - 12691458
Alignment:
| Q |
220 |
gaaggaattctctactgatcattgtgattttatgtgtgcatgcatgatattgggatcttttttattttcattattattaagtaaaacaagaacagnnnnn |
319 |
Q |
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| T |
12691213 |
gaaggaattctctactgatcattgtgattttatgtgtgcatgcatgatattgggatcatttttattttcattattattaagtaaaacaagaacagaaaaa |
12691312 |
T |
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| Q |
320 |
nntagaaaaacatccaaataagagatattgtcatattgatatctcgtttcaacataaatgttttgtcattttcctaacaaggctctagtcttcaccaact |
419 |
Q |
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| T |
12691313 |
aatagaaaaacatccaaataagagatattgtcatattgatatctcgtttcaacataaatgttttgtcattttcctaacaaggctctagtcttcaccaact |
12691412 |
T |
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| Q |
420 |
atacaagttatcaaaaattaaacttttttctttccttgttcatctc |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12691413 |
atacaagttatcaaaaattaaacttttttctttccttgtccatctc |
12691458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 12690996 - 12691080
Alignment:
| Q |
98 |
gtccaataccacattgaatacgggaaactgagatgctatcagatgacaacggtgatgatgtctcacatggctttgacattgtgaa |
182 |
Q |
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| T |
12690996 |
gtccaataccacattgaatacgggaaactgagatgctatcagatgacaacggtgatgatgtctcacatggctttgacattgtgaa |
12691080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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