View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0256-INSERTION-10 (Length: 595)

Name: NF0256-INSERTION-10
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0256-INSERTION-10
NF0256-INSERTION-10
[»] chr8 (2 HSPs)
chr8 (1-190)||(9787295-9787485)
chr8 (430-595)||(9787116-9787284)
[»] chr6 (7 HSPs)
chr6 (441-588)||(30144516-30144664)
chr6 (2-113)||(29012926-29013038)
chr6 (1-93)||(34282011-34282104)
chr6 (1-82)||(29131401-29131483)
chr6 (137-187)||(32744658-32744708)
chr6 (137-178)||(29124378-29124419)
chr6 (503-563)||(29140117-29140177)
[»] chr7 (1 HSPs)
chr7 (136-195)||(42446566-42446625)
[»] chr5 (1 HSPs)
chr5 (148-195)||(39720782-39720829)
[»] chr4 (1 HSPs)
chr4 (136-195)||(9602367-9602426)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 9787485 - 9787295
Alignment:
Q  1 gagcgtcctatcggaatggggaccaagggtgaaataatattcctaagaaaagatggg-aacttgcttggcttgatttgagtactcatatgattggagagt 99  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| || ||||    
T  9787485 gagcgtcctatcggagtggggaccaagggtgaaataatattcctaagaaaagatggggaacttgcttggcttgatctgagtactcatatgatcggggagt 9787386  T
Q  100 ttggttgtaaagcatcgagttttagttgtgacctagtaatttacaaggaaagcattcttccaataggaggaataaataactaattgttttt 190  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9787385 ttggttgtaaagcatcgagtttttgttgtcacctagtaatttacaaggaaagcattctttcaataggaggaataaataactaattgttttt 9787295  T

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Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 430 - 595
Target Start/End: Complemental strand, 9787284 - 9787116
Alignment:
Q  430 caacatcct-agatagcattttcattcatggtaactttaagatgctatatcagcatttcacacattttggttttggctgcaacaatggtactctctctgc 528  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  9787284 caacatccttagatagcattttcatttatggtaactttaagatgctatctcagcattgcacacattttggttttggctgcaacaatggtaccctctctgc 9787185  T
Q  529 taa--ctcattttttgttgcaatgctatgcagagaatcacaaaattatgttgtgataactgatagaata 595  Q
    |||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9787184 taactctcattttttgttgcaatgctatgcagagaatcacaaaataatgttgtgataactgatagaata 9787116  T

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Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 441 - 588
Target Start/End: Complemental strand, 30144664 - 30144516
Alignment:
Q  441 atagcattttcattcatggtaactttaagatgctatatcagcatttcacacattttggttttggctgcaacaatggtactctctctgctaa--ctcattt 538  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||  |||||||    
T  30144664 atagcatttttattcatggtaactttaa-atgctatatcagcacttcacacattttggttttggctgaaacaatggtattctctctgctaactctcattt 30144566  T
Q  539 tttgttgcaatgctatgcagagaatcacaaaattatgttgtgataactga 588  Q
    |||||||||| |||||||| ||||||||||||| ||| ||||||||||||    
T  30144565 tttgttgcaaagctatgcacagaatcacaaaataatgctgtgataactga 30144516  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 29012926 - 29013038
Alignment:
Q  2 agcgtcctatcggaatggggaccaagggtgaaataatattcctaagaaaagatgg-gaacttgcttggcttgatttgagtactcatatgattggagagtt 100  Q
    |||||||||||||| ||||||| || || |||||| | ||| | ||||||||||  ||||| | |||||||||||||||||| || |||||||  ||| |    
T  29012926 agcgtcctatcggagtggggacgaaaggagaaatattcttcatcagaaaagatgaagaactagtttggcttgatttgagtacccaaatgattgaggaggt 29013025  T
Q  101 tggttgtaaagca 113  Q
    ||||| |||||||    
T  29013026 tggttataaagca 29013038  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 34282011 - 34282104
Alignment:
Q  1 gagcgtcctatcggaatggggaccaagggtgaaataatattcctaagaaaagat-gggaacttgcttggcttgatttgagtactcatatgattg 93  Q
    ||||||||||||||| ||||||| ||||| |||||| | ||| |||||||||||   ||| | |||||| ||||||||||||| || |||||||    
T  34282011 gagcgtcctatcggagtggggacaaagggggaaatattcttcataagaaaagataaagaagtggcttggtttgatttgagtacccaaatgattg 34282104  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29131401 - 29131483
Alignment:
Q  1 gagcgtcctatcggaatggggaccaagggtgaaataatattcctaagaaaagatg-ggaacttgcttggcttgatttgagtac 82  Q
    ||||||||||| ||| ||||||| || || |||||| | ||||||||||||||||  ||||| | |||||||||||| |||||    
T  29131401 gagcgtcctattggagtggggacaaaaggagaaatattcttcctaagaaaagatgaagaactagtttggcttgatttaagtac 29131483  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 32744708 - 32744658
Alignment:
Q  137 aatttacaaggaaagcattcttccaataggaggaataaataactaattgtt 187  Q
    ||||||||||||||||||||||||| | | |||||||||| | ||||||||    
T  32744708 aatttacaaggaaagcattcttccatttgaaggaataaatgattaattgtt 32744658  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 29124378 - 29124419
Alignment:
Q  137 aatttacaaggaaagcattcttccaataggaggaataaataa 178  Q
    ||||||||||||||||||||||||| | | ||||||||||||    
T  29124378 aatttacaaggaaagcattcttccatttgaaggaataaataa 29124419  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 563
Target Start/End: Original strand, 29140117 - 29140177
Alignment:
Q  503 ggctgcaacaatggtactctctctgctaactcattttttgttgcaatgctatgcagagaat 563  Q
    |||||||| | ||||||||| |  | |||||||| ||||||||||||| ||||||||||||    
T  29140117 ggctgcaagactggtactcttttggttaactcatgttttgttgcaatgttatgcagagaat 29140177  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 42446566 - 42446625
Alignment:
Q  136 taatttacaaggaaagcattcttccaataggaggaataaataactaattgtttttcttgt 195  Q
    |||| |||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||    
T  42446566 taatatacaaggaaaacattcttccaattggaggaataattaattaattgtttttcttgt 42446625  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 39720829 - 39720782
Alignment:
Q  148 aaagcattcttccaataggaggaataaataactaattgtttttcttgt 195  Q
    ||||| ||||||||||||||||||| ||||| ||||| ||||||||||    
T  39720829 aaagctttcttccaataggaggaatgaataattaattttttttcttgt 39720782  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 9602426 - 9602367
Alignment:
Q  136 taatttacaaggaaagcattcttccaataggaggaataaataactaattgtttttcttgt 195  Q
    |||| |||||||||| |||||||||||| |||||||||| ||| || || ||||||||||    
T  9602426 taatatacaaggaaaacattcttccaatcggaggaataagtaattagttatttttcttgt 9602367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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