View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0256-INSERTION-12 (Length: 525)

Name: NF0256-INSERTION-12
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0256-INSERTION-12
NF0256-INSERTION-12
[»] chr4 (4 HSPs)
chr4 (91-257)||(30248612-30248780)
chr4 (308-436)||(30248799-30248927)
chr4 (8-82)||(30248514-30248588)
chr4 (431-469)||(30246768-30246806)
[»] chr7 (1 HSPs)
chr7 (208-251)||(28543545-28543588)
[»] chr1 (2 HSPs)
chr1 (202-247)||(5923865-5923910)
chr1 (208-251)||(21516525-21516568)
[»] chr8 (1 HSPs)
chr8 (208-251)||(43408681-43408724)
[»] chr5 (1 HSPs)
chr5 (208-251)||(31806609-31806652)
[»] chr6 (1 HSPs)
chr6 (209-257)||(29490228-29490276)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 91 - 257
Target Start/End: Original strand, 30248612 - 30248780
Alignment:
Q  91 gtattatttcatttaaattgatgtattacattaaaaacaaaacaatttaatgtccatatgttaaaaagttccggtaatcatcactcaatagca--tatgc 188  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  30248612 gtattatttcatttaaattgatgtattacattaaaaacaacacaatttcatgtccatatgttaaaaagttccggtaatcatcactcaatagcatttatgc 30248711  T
Q  189 taactgaatcaaattttactgtttggtaaaattaatgattgaaatagcttataaatatgaaattatata 257  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30248712 taactgaatcaatttttactgtttggtaaaattaatgatttaaatagcttataaatatgaaattatata 30248780  T

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Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 308 - 436
Target Start/End: Original strand, 30248799 - 30248927
Alignment:
Q  308 ttcatgtcgaaatagcaattcatgcagtttctttcatttatgttaacttacatatttactttcaaagtctattacttatgcaattttattcaaatcaaag 407  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30248799 ttcatgccgaaatagcaattcatgcagtttctttcatttatgttaacttacagatttactttcaaagtctattacttatgcaattttattcaaatcaaag 30248898  T
Q  408 caaattaaaattttagcattacaaattca 436  Q
    |||||||||||||||||||||||||||||    
T  30248899 caaattaaaattttagcattacaaattca 30248927  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 30248514 - 30248588
Alignment:
Q  8 tgtcctacacatacgcatttttcttaaaattaatgtgaattattatcctgaagtatatgaaaattagaagtacct 82  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30248514 tgtcctacacatacgcatttatcttaaaattaatgtcaattattatcctgaagtatatgaaaattagaagtacct 30248588  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 30246768 - 30246806
Alignment:
Q  431 aattcactttttgatatgctagattgagtctatatgttt 469  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30246768 aattcactttttgatatgctagattgagtctatatgttt 30246806  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 28543545 - 28543588
Alignment:
Q  208 tgtttggtaaaattaatgattgaaatagcttataaatatgaaat 251  Q
    ||||||||||||||| |||||||||||| |||||||||||||||    
T  28543545 tgtttggtaaaattagtgattgaaatagtttataaatatgaaat 28543588  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 5923910 - 5923865
Alignment:
Q  202 ttttactgtttggtaaaattaatgattgaaatagcttataaatatg 247  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||||    
T  5923910 ttttagtgtttggtaaaattaatggttgaactagcttataaatatg 5923865  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 21516525 - 21516568
Alignment:
Q  208 tgtttggtaaaattaatgattgaaatagcttataaatatgaaat 251  Q
    ||||||||||||||| || |||||||||||| ||||||||||||    
T  21516525 tgtttggtaaaattagtggttgaaatagcttttaaatatgaaat 21516568  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 43408724 - 43408681
Alignment:
Q  208 tgtttggtaaaattaatgattgaaatagcttataaatatgaaat 251  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  43408724 tgtttggtaaaattagtaattgaactagcttataaatatgaaat 43408681  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 31806609 - 31806652
Alignment:
Q  208 tgtttggtaaaattaatgattgaaatagcttataaatatgaaat 251  Q
    |||||||||||||||| ||||||| || ||||||||||||||||    
T  31806609 tgtttggtaaaattaaggattgaactatcttataaatatgaaat 31806652  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 29490276 - 29490228
Alignment:
Q  209 gtttggtaaaattaatgattgaaatagcttataaatatgaaattatata 257  Q
    ||||||||||||||||| ||||| ||  ||||||||||||||| |||||    
T  29490276 gtttggtaaaattaatggttgaagtaatttataaatatgaaatgatata 29490228  T

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