View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0256-INSERTION-12 (Length: 525)
Name: NF0256-INSERTION-12
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0256-INSERTION-12
Alignment Details
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 91 - 257
Target Start/End: Original strand, 30248612 - 30248780
Alignment:
Q
91
gtattatttcatttaaattgatgtattacattaaaaacaaaacaatttaatgtccatatgttaaaaagttccggtaatcatcactcaatagca--tatgc
188
Q
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
T
30248612
gtattatttcatttaaattgatgtattacattaaaaacaacacaatttcatgtccatatgttaaaaagttccggtaatcatcactcaatagcatttatgc
30248711
T
Q
189
taactgaatcaaattttactgtttggtaaaattaatgattgaaatagcttataaatatgaaattatata
257
Q
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
T
30248712
taactgaatcaatttttactgtttggtaaaattaatgatttaaatagcttataaatatgaaattatata
30248780
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 308 - 436
Target Start/End: Original strand, 30248799 - 30248927
Alignment:
Q
308
ttcatgtcgaaatagcaattcatgcagtttctttcatttatgttaacttacatatttactttcaaagtctattacttatgcaattttattcaaatcaaag
407
Q
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
T
30248799
ttcatgccgaaatagcaattcatgcagtttctttcatttatgttaacttacagatttactttcaaagtctattacttatgcaattttattcaaatcaaag
30248898
T
Q
408
caaattaaaattttagcattacaaattca
436
Q
|||||||||||||||||||||||||||||
T
30248899
caaattaaaattttagcattacaaattca
30248927
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 30248514 - 30248588
Alignment:
Q
8
tgtcctacacatacgcatttttcttaaaattaatgtgaattattatcctgaagtatatgaaaattagaagtacct
82
Q
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
30248514
tgtcctacacatacgcatttatcttaaaattaatgtcaattattatcctgaagtatatgaaaattagaagtacct
30248588
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 469
Target Start/End: Original strand, 30246768 - 30246806
Alignment:
Q
431
aattcactttttgatatgctagattgagtctatatgttt
469
Q
|||||||||||||||||||||||||||||||||||||||
T
30246768
aattcactttttgatatgctagattgagtctatatgttt
30246806
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 28543545 - 28543588
Alignment:
Q
208
tgtttggtaaaattaatgattgaaatagcttataaatatgaaat
251
Q
||||||||||||||| |||||||||||| |||||||||||||||
T
28543545
tgtttggtaaaattagtgattgaaatagtttataaatatgaaat
28543588
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 5923910 - 5923865
Alignment:
Q
202
ttttactgtttggtaaaattaatgattgaaatagcttataaatatg
247
Q
||||| |||||||||||||||||| ||||| |||||||||||||||
T
5923910
ttttagtgtttggtaaaattaatggttgaactagcttataaatatg
5923865
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 21516525 - 21516568
Alignment:
Q
208
tgtttggtaaaattaatgattgaaatagcttataaatatgaaat
251
Q
||||||||||||||| || |||||||||||| ||||||||||||
T
21516525
tgtttggtaaaattagtggttgaaatagcttttaaatatgaaat
21516568
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 43408724 - 43408681
Alignment:
Q
208
tgtttggtaaaattaatgattgaaatagcttataaatatgaaat
251
Q
||||||||||||||| | |||||| |||||||||||||||||||
T
43408724
tgtttggtaaaattagtaattgaactagcttataaatatgaaat
43408681
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 31806609 - 31806652
Alignment:
Q
208
tgtttggtaaaattaatgattgaaatagcttataaatatgaaat
251
Q
|||||||||||||||| ||||||| || ||||||||||||||||
T
31806609
tgtttggtaaaattaaggattgaactatcttataaatatgaaat
31806652
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 29490276 - 29490228
Alignment:
Q
209
gtttggtaaaattaatgattgaaatagcttataaatatgaaattatata
257
Q
||||||||||||||||| ||||| || ||||||||||||||| |||||
T
29490276
gtttggtaaaattaatggttgaagtaatttataaatatgaaatgatata
29490228
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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