View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256-INSERTION-5 (Length: 694)
Name: NF0256-INSERTION-5
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256-INSERTION-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 182 - 694
Target Start/End: Complemental strand, 33928267 - 33927743
Alignment:
| Q |
182 |
aaattcacaaatcaaaggaaattatcaatatggtcatcaagagtttcaaagcattaatgatgatattattgatgataataat---gaatttgaaaataat |
278 |
Q |
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| T |
33928267 |
aaattcacaaatcaaaggaaattatcaatatggtcatcaagagtttcaaagcattaatgatgatattattgatgataataataatgactttgaaaataat |
33928168 |
T |
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| Q |
279 |
gggaaattattagtgaagtctgcttcagttccagctgatttaaaccttgaagtccatcatcatca---------caaaattaccagcaaaggtgaattat |
369 |
Q |
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| T |
33928167 |
gggaaattattagtgaagtctgcttcagttccagctgatttaaaccttgaaatccatcatcatcatcatcatcacaaaattaccagcaaaggtgaattat |
33928068 |
T |
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| Q |
370 |
tacaagatggtggagtttcacatgatcaagagtttgattctattctttcatttgagaatcttaacaatggtgctgcttgggacaagtcaacttgtgattc |
469 |
Q |
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| T |
33928067 |
tacaagatggtggagtttcacatgatcaagagtttgattctattctttcatttgagaatcttaacaatggtgctgcttgggacaagtcaacttgtgattc |
33927968 |
T |
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| Q |
470 |
tatgcctgaaaagtgttcagc-tcttcttcttcttctcatcacaagaatattaagaatttatgtgcagctcctcctcctttgtcatttcttgagaaatgg |
568 |
Q |
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| T |
33927967 |
tatgcctgaaaagtgttcagcttcttcttcttcttctcatcacaagaatattaagaatttatgtgcagctcctcctcctttgtcatttcttgagaaatgg |
33927868 |
T |
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| Q |
569 |
ttattggatgaaaatgttggtcatgttgaggaaatgatggaattatctcc-atgttctaacttggagaggnnnnnnnnnnntcaccaaataaacccttaa |
667 |
Q |
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| T |
33927867 |
ttattggatgaaaatgttggtcatgttgaggaaatgatggaattatctccaatgttctaacttgga-agg-aaaaaaaaaatcaccaaataaacccttaa |
33927770 |
T |
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| Q |
668 |
gtttgggatgtcatggaaattattatt |
694 |
Q |
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| T |
33927769 |
gtttgggatgtcatggaaattattatt |
33927743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 33927630 - 33927449
Alignment:
| Q |
7 |
aggatctctttcaacttgtaacttgaattgtttaattacatgtttttaattattttaattactataagcttaattagtgcatgtggttgctctttgcctt |
106 |
Q |
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| T |
33927630 |
aggatctctttcaacttgtaacttgaattgtttaattaaatgtttttaattattttaattactataagcttaattagtgcatgtggttgctctttgcctt |
33927531 |
T |
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| Q |
107 |
gtagaaaaactacaaatgttaactttgagcctaaatagtaatgaatacaataacagttatgatatcaaaagatttaaattca |
188 |
Q |
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| T |
33927530 |
gtagaaaaactacaaatgttaactttgagcctaaatagtaatgaatacaataacagttatgatatcaaaagatttaaattca |
33927449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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