View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256-INSERTION-6 (Length: 623)
Name: NF0256-INSERTION-6
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256-INSERTION-6 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 189 - 409
Target Start/End: Original strand, 9789154 - 9789374
Alignment:
| Q |
189 |
acaagcaaacataataacataagcatacatgttagcgcggtaaaatgagcagacagacggatgcggtaaaataacacataaacaaagtagaaaaaatcta |
288 |
Q |
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| T |
9789154 |
acaagcaaacataataaaatatgcatacacgttagcgcggtaaaatgagcagacagacggatgcggtaaaataacagataaacaaagtagaaaaaaccta |
9789253 |
T |
|
| Q |
289 |
ttaaagagattattttgagnnnnnnnctacattatcccttcataaaatttgtaaatcttttttaaattcttaacatgtgtcctaatgacacttgttaata |
388 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9789254 |
ttaaagagattattttgaatttttttctacattatcccttcataaaatttgtaaatcatttttaaattcttaacatgtgtcctaatgacacttgttaata |
9789353 |
T |
|
| Q |
389 |
taccctaaaataaatcctacg |
409 |
Q |
| |
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||||||||||||||||||||| |
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| T |
9789354 |
taccctaaaataaatcctacg |
9789374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 9787507 - 9787663
Alignment:
| Q |
27 |
gtgaagagtttgatccatgatttcttcatagttcgcccaaaattgatatatgaagagtagtcatctctatgtgatatgatattaaagtgatgaacccatt |
126 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| | |||| ||||| | |
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| T |
9787507 |
gtgaagagtttgatccatgatttcttcatagttcgcccaaaattgatatgtgaagagtagccatctctacgtgatatgatattaaggcgatggacccagt |
9787606 |
T |
|
| Q |
127 |
taacaccgtcgatattaaccaccacattccatcatcaaaccaatcatctaggtctaa |
183 |
Q |
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| T |
9787607 |
taacaccgtcaatattaaccaccacattccatcatcaaaccaatcatctaggtctaa |
9787663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 426 - 623
Target Start/End: Original strand, 9789365 - 9789578
Alignment:
| Q |
426 |
aaatcctacgttgttatagagttaatgtgaacactagctggtgaaagtcta-ttattgatgctcaaaataattgacatttcatgcatcaat--------t |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
9789365 |
aaatcctacgttgttatagagttaatgtgaacactagctggtgaaagtctatttattgatgctcaaaataattgacatttcatgcatcaatgacgctaat |
9789464 |
T |
|
| Q |
517 |
atccatccccatactgaaatagacatttttagttacttagaca------atcgtactcgtttcaactatatggagaatgtttgggccagcat--ttatcc |
608 |
Q |
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| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9789465 |
cttagtccccatactgaaatagaca-ttttagttacttagacaacatatatcgtactcgtttcaactatatggagaatgtttgggccagcataattatcc |
9789563 |
T |
|
| Q |
609 |
atccccatttataat |
623 |
Q |
| |
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||||||||||||||| |
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|
| T |
9789564 |
atccccatttataat |
9789578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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