View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256-INSERTION-9 (Length: 550)
Name: NF0256-INSERTION-9
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256-INSERTION-9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 275 - 550
Target Start/End: Original strand, 9230782 - 9231055
Alignment:
| Q |
275 |
aattcagttctgatataggatacctatccagaagtttttccaactcaatcatgtatgatggaatcatcaaagatttgacttcttcgaactctgtctgtaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9230782 |
aattcagttctgatataggatacctatccagaagtttttccaactcaatcatgtatgatggaatcatcaaagatttgacttcttcgaactctgtctgtaa |
9230881 |
T |
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| Q |
375 |
ctcattagagaatcgagaaacaaagacaagatgtgtctgaatgagatatccggtaacaagaagaaggataagggattaaaacgaagaactccctcagatg |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
9230882 |
ctcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaagaaggataa-ggtttaaaacgaagaactccctcagatg |
9230980 |
T |
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| Q |
475 |
ggtcgatatcaatggtgactcaattttctaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
550 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9230981 |
ggtcgatatcaatggtgactc-attttccaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
9231055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 275 - 550
Target Start/End: Complemental strand, 18351806 - 18351533
Alignment:
| Q |
275 |
aattcagttctgatataggatacctatccagaagtttttccaactcaatcatgtatgatggaatcatcaaagatttgacttcttcgaactctgtctgtaa |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18351806 |
aattcagttctgatataggatacctatccagaagtttttccaactcaatcatgtatgatggaatcatcaaagatttgacttcttcgaactctgtctgtaa |
18351707 |
T |
|
| Q |
375 |
ctcattagagaatcgagaaacaaagacaagatgtgtctgaatgagatatccggtaacaagaagaaggataagggattaaaacgaagaactccctcagatg |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
18351706 |
ctcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaagaaggataa-ggtttaaaacgaagaactccctcagatg |
18351608 |
T |
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| Q |
475 |
ggtcgatatcaatggtgactcaattttctaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
550 |
Q |
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| T |
18351607 |
ggtcgatatcaatggtgactc-attttccaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
18351533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 549
Target Start/End: Complemental strand, 16902904 - 16902874
Alignment:
| Q |
519 |
acgtgcacaagaaaattgtgtcgacacttac |
549 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16902904 |
acgtgcacaagaaaattgtgtcgacacttac |
16902874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 44389395 - 44389672
Alignment:
| Q |
1 |
gagcacatgtcaccagaaacaattccaagctatcaacaaggtcataagtcacgtacatatattagatcctgcnnnnnnnnnnnnntcaagcatcaaagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
44389395 |
gagcacatgtcaccagaaacaattccaagctatcaacaaggtcataagtcatgtacatatattagatcctgcaaaaaagaaaaaatcaagcatcaaagct |
44389494 |
T |
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| Q |
101 |
actttgaaattagaaaaagtgattttgagctggggtatgtccttcagtaatttcatcaagaaacagaagaccctagtgaaatacttgaatgattggctac |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44389495 |
actttgaaattagaaaaagtgattttgaactggggtatgtccttcagtaatttcatcaagaaacagaagaccctagtgaaatacttgaatgattggctac |
44389594 |
T |
|
| Q |
201 |
aaaagtgcgctccccaagaaacagaagaatctgaagatggactggaaactcctcctatttttggagtttgtaacaatt |
278 |
Q |
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| T |
44389595 |
aaaagtgtgctccccaagaaacagaagaatctgaagatggactagaaactcctcctatttttggagtttgtaacaatt |
44389672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 275 - 550
Target Start/End: Complemental strand, 2915230 - 2914959
Alignment:
| Q |
275 |
aattcagttctgatataggatacctatccagaagtttttccaactcaatcatgtatgatggaatcatcaaagatttgacttcttcgaactctgtctgtaa |
374 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2915230 |
aattcagttctgatataggatatctatctagaagtttttccaactcaatcatgtatgatggaatcatcaaagatttgacttcttcgaactctgtctgtaa |
2915131 |
T |
|
| Q |
375 |
ctcattagagaatcgagaaacaaagacaagatgtgtctgaatgagatatccggtaacaagaagaaggataagggattaaaacgaagaactccctcagatg |
474 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2915130 |
ctcattagagaatcgagaaacaaagaaaagatgtg-ctgaacgagatatccgataacaagaagaaggataa-ggattaaaacgaagaactccctcagatg |
2915033 |
T |
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| Q |
475 |
ggtcgatatcaatggtgactcaattttctaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
550 |
Q |
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||| | |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2915032 |
ggttggtatc-atggtgactc-attttccaaaatatcttcgcacacgtgcacaagaaaattgtgtagacacttact |
2914959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 40808400 - 40808347
Alignment:
| Q |
497 |
attttctaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
550 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40808400 |
attttccaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
40808347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 275 - 550
Target Start/End: Original strand, 7999221 - 7999494
Alignment:
| Q |
275 |
aattcagttctgatataggatacctatccagaagtttttccaactcaatcatgtatgatggaatcatcaaagatttgacttcttcgaactctgtctgtaa |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7999221 |
aattcagttctgatataggatacctatccagaagtttttccaactctatcatgtatgatggaatcatcaaagatttgacttcttcgaactctttctgtaa |
7999320 |
T |
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| Q |
375 |
ctcattagagaatcgagaaacaaagacaagatgtgtctgaatgagatatccggtaacaagaagaaggataagggattaaaacgaagaactccctcagatg |
474 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
7999321 |
ctcattagagaatcaagaaacaaagaaaagatttgtctaaacgagatatccggtaacaagaagaaggataa-ggactaaaacgaagaactccctcagatg |
7999419 |
T |
|
| Q |
475 |
ggtcgatatcaatggtgactcaattttctaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
550 |
Q |
| |
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||| |||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||| ||| ||||||||| |
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|
| T |
7999420 |
ggtagatatcaatggtgactcatttttc-aaaatatcttcgcacacatgctcaagaaaattatgtaaacacttact |
7999494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 275 - 447
Target Start/End: Complemental strand, 2218 - 2046
Alignment:
| Q |
275 |
aattcagttctgatataggatacctatccagaagtttttccaactcaatcatgtatgatggaatcatcaaagatttgacttcttcgaactctgtctgtaa |
374 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
2218 |
aattcagttcagatgtaggatacctatccagaagttttcgcaactcaatcatgtatgatggaatcatcaaagatttgaccttttcgaactctgtctgtaa |
2119 |
T |
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| Q |
375 |
ctcattagagaatcgagaaacaaagacaagatgtgtctgaatgagatatccggtaacaagaagaaggataagg |
447 |
Q |
| |
|
|||| || || ||| |||||||||| ||||||||| ||| ||||||||| | |||||||||||||| |||| |
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| T |
2118 |
ctcactataggctcgggaaacaaagagaagatgtgtacgaacgagatatccagcaacaagaagaaggaaaagg |
2046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 30242371 - 30242318
Alignment:
| Q |
497 |
attttctaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttact |
550 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30242371 |
attttccaaaatatattcgcacacgtgcacaagaaaattgtgtcgacacttact |
30242318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 47874607 - 47874647
Alignment:
| Q |
275 |
aattcagttctgatataggatacctatccagaagtttttcc |
315 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47874607 |
aattcagttatgatataggatacctatccagaagtttttcc |
47874647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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