View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0256_high_14 (Length: 272)

Name: NF0256_high_14
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0256_high_14
NF0256_high_14
[»] chr5 (7 HSPs)
chr5 (1-181)||(15290796-15290976)
chr5 (118-181)||(36415954-36416017)
chr5 (56-108)||(15284988-15285041)
chr5 (118-181)||(285342-285405)
chr5 (118-181)||(32425068-32425131)
chr5 (118-181)||(21023414-21023477)
chr5 (120-181)||(25038196-25038257)
[»] chr2 (3 HSPs)
chr2 (119-181)||(4723682-4723744)
chr2 (118-172)||(42554899-42554953)
chr2 (121-181)||(43057558-43057618)
[»] chr7 (7 HSPs)
chr7 (118-181)||(36920901-36920964)
chr7 (118-181)||(21153168-21153231)
chr7 (118-181)||(33212142-33212205)
chr7 (116-154)||(27075611-27075649)
chr7 (116-154)||(27202662-27202700)
chr7 (123-181)||(42640959-42641017)
chr7 (118-151)||(27330919-27330952)
[»] chr3 (5 HSPs)
chr3 (118-181)||(11335194-11335257)
chr3 (118-181)||(40159718-40159781)
chr3 (118-181)||(41369695-41369758)
chr3 (118-181)||(50745476-50745539)
chr3 (118-181)||(51032518-51032581)
[»] chr4 (8 HSPs)
chr4 (118-171)||(4489691-4489744)
chr4 (118-181)||(12241173-12241236)
chr4 (118-181)||(39880922-39880985)
chr4 (118-181)||(51540739-51540802)
chr4 (118-181)||(53356969-53357032)
chr4 (118-151)||(29406929-29406962)
chr4 (119-172)||(30890178-30890231)
chr4 (118-151)||(46363884-46363917)
[»] chr8 (6 HSPs)
chr8 (118-181)||(9550315-9550378)
chr8 (118-181)||(31806415-31806478)
chr8 (118-181)||(40719536-40719599)
chr8 (118-178)||(34996252-34996312)
chr8 (118-181)||(9048208-9048271)
chr8 (118-181)||(39153576-39153639)
[»] scaffold0001 (1 HSPs)
scaffold0001 (118-172)||(404873-404927)
[»] chr1 (5 HSPs)
chr1 (118-151)||(34157651-34157684)
chr1 (118-181)||(11570255-11570318)
chr1 (118-172)||(34002212-34002266)
chr1 (116-181)||(32811754-32811819)
chr1 (121-181)||(10302238-10302298)
[»] chr6 (4 HSPs)
chr6 (118-178)||(27102219-27102279)
chr6 (118-178)||(27144041-27144101)
chr6 (118-181)||(26391175-26391238)
chr6 (120-181)||(15098854-15098915)
[»] scaffold0024 (1 HSPs)
scaffold0024 (119-181)||(92064-92126)


Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 15290796 - 15290976
Alignment:
Q  1 aaaatagtattattcctattgtgttgaacacacgtgtannnnnnnattgctaacttttattcttatcaaaagtctaaaatattgtattttgaaaagttag 100  Q
    ||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15290796 aaaatagtattattcgtattgtgttgaacacacgtgtatttttttattgctaacttttattcttatcaatagtctaaaatattgtattttgaaaagttag 15290895  T
Q  101 ttcaactcnnnnnnnaatagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||       | |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  15290896 ttcaactctttttttagtagtgatatatgtacaactctttggtacaacttttataataattttaattttctcccttttgat 15290976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 36415954 - 36416017
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||||||||||||||||||||||||||||||||| || || |||||  ||||||| ||||||||    
T  36415954 tagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgat 36416017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 15284988 - 15285041
Alignment:
Q  56 tttattcttatcaaaa-gtctaaaatattgtattttgaaaagttagttcaactc 108  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  15284988 tttattcttatcaaaaagtctaaaatattgtattttaaaaagttagttaaactc 15285041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 285405 - 285342
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||| |||||||||| ||  | |||||||||||||  ||||||||    
T  285405 tagtgatatatgtacaactctttagtacaactttcatgccaactttaattttctatcttttgat 285342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 32425131 - 32425068
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||||| |||||||||||| |||||||||||||| || || |||||||||||||  ||||||||    
T  32425131 tagtgacatatgtacaactatttggtacaactttcatgacaactttaattttctatcttttgat 32425068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 21023477 - 21023414
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||||||||||||||||||||||||||||| ||| || |  |||||| ||||||  ||||||||    
T  21023477 tagtgatatatgtacaactctttggtacaattttcatgataactttagttttctatcttttgat 21023414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 25038257 - 25038196
Alignment:
Q  120 gtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||| |||||||||||||||||||||||| || |  |||||| |||| || ||||||||    
T  25038257 gtgatatttgtacaactctttggtacaactttcatgataactttagttttatctcttttgat 25038196  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 4723744 - 4723682
Alignment:
Q  119 agtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||    
T  4723744 agtgatatatgtacaactctttggtacaacttttataacaactttagttttctctcttttgat 4723682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 42554953 - 42554899
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctc 172  Q
    |||||||||| |||||||  |||||||||||||| ||||| ||||| ||||||||    
T  42554953 tagtgatataagtacaaccatttggtacaactttgataacaactttcattttctc 42554899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 43057558 - 43057618
Alignment:
Q  121 tgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||| ||||||| || |||||| || || |||||| ||||||| ||||||||    
T  43057558 tgatatatgtacacctctttgatataactttcatgacaactttagttttctctcttttgat 43057618  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 36920964 - 36920901
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| |||||||| | ||||||    
T  36920964 tagtgatatatgtacaactctttggtacaacttttattacaactttgattttctctcatttgat 36920901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 21153231 - 21153168
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||| |||||||||||||| || || ||||| |||||||| ||||||||    
T  21153231 tagtgatatatgtacaactttttggtacaactttcatgacaactttgattttctctcttttgat 21153168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 33212205 - 33212142
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| | ||||||    
T  33212205 tagtgatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgat 33212142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 27075649 - 27075611
Alignment:
Q  116 aatagtgatatatgtacaactctttggtacaacttttat 154  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  27075649 aataatgatatatgtacaactctttggtacaacttttat 27075611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 27202662 - 27202700
Alignment:
Q  116 aatagtgatatatgtacaactctttggtacaacttttat 154  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  27202662 aataatgatatatgtacaactctttggtacaacttttat 27202700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 42641017 - 42640959
Alignment:
Q  123 atatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||||||||||||||||||||||||||||||| |  ||||| ||||||||  |||||||    
T  42641017 atatatgtacaactctttggtacaacttttatgataactttgattttctcttttttgat 42640959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 27330919 - 27330952
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttt 151  Q
    ||||||||||||||||||||||||||||||||||    
T  27330919 tagtgatatatgtacaactctttggtacaacttt 27330952  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 11335194 - 11335257
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| ||||||| | ||||||    
T  11335194 tagtgatatatgtacaactctttggtacaacttttattacaactttagttttctctcatttgat 11335257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 40159718 - 40159781
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||||||||||||||||||||||||||||||||| || || |||||  ||||||| ||||||||    
T  40159718 tagtgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgat 40159781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 41369758 - 41369695
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||  ||||||||||||||||||| || |||||| ||||||| ||||||||    
T  41369758 tagtgatatatgtacacttctttggtacaacttttatgacaactttagttttctctcttttgat 41369695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 50745539 - 50745476
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||| |||||||||||||||||||||||||||| ||| || ||||||||| |||| | ||||||    
T  50745539 tagtaatatatgtacaactctttggtacaacttctatgacaactttaattgtctctcatttgat 50745476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 51032518 - 51032581
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||| |||  ||||||||| || || |||||||||||||  ||||||||    
T  51032518 tagtgatatatgtacaacttttttatacaactttcatgacaactttaattttctatcttttgat 51032581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 4489691 - 4489744
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttct 171  Q
    |||||||||||||||||||||||||||||||||| || || |||||||||||||    
T  4489691 tagtgatatatgtacaactctttggtacaactttcatgacaactttaattttct 4489744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 12241236 - 12241173
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||| ||||||||||||| ||||||| ||||| || |||||| ||||||| ||||||||    
T  12241236 tagtgatatttgtacaactcttttgtacaacctttatgacaactttatttttctctcttttgat 12241173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 39880922 - 39880985
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||| |||||||||| || || |||||  ||||||| ||||||||    
T  39880922 tagtgatatatgtacaactctttcgtacaactttcatgacaactttggttttctctcttttgat 39880985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 51540739 - 51540802
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||| ||||||||||||||||||||||||| || | |||  ||||||| ||||||||    
T  51540739 tagtgatatatatacaactctttggtacaacttttatgacaattttggttttctctcttttgat 51540802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 53356969 - 53357032
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||| ||| |||| | ||||||    
T  53356969 tagtgatatatgtacaactctttggtacaacttctatgacaactttgattgtctctcatttgat 53357032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 29406929 - 29406962
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttt 151  Q
    ||||||||||||||||||||||||||||||||||    
T  29406929 tagtgatatatgtacaactctttggtacaacttt 29406962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 30890178 - 30890231
Alignment:
Q  119 agtgatatatgtacaactctttggtacaacttttataacgactttaattttctc 172  Q
    ||||||||||||||||||||||||||||| |||||| || |||||  |||||||    
T  30890178 agtgatatatgtacaactctttggtacaatttttatgacaactttggttttctc 30890231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 46363884 - 46363917
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttt 151  Q
    ||||||| ||||||||||||||||||||||||||    
T  46363884 tagtgatctatgtacaactctttggtacaacttt 46363917  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 9550315 - 9550378
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||||||||||||||||||||||| ||||||||| || || |||||||||||||  ||||||||    
T  9550315 tagtgatatatgtacaactctttgatacaactttcatgacaactttaattttctatcttttgat 9550378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 31806478 - 31806415
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||||||||||||| |||||||||||||||||||||| || |||||| ||||||| | ||||||    
T  31806478 tagtgatatatgtataactctttggtacaacttttattacaactttagttttctctcatttgat 31806415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 40719536 - 40719599
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||  ||||||| ||||||||    
T  40719536 tagtgatatatgtacaactctttcgtacaacttttatgacaactttggttttctctcttttgat 40719599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 34996252 - 34996312
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctccctttt 178  Q
    ||||||||||||||||||| |||||||||||||| || || ||||| |||| ||| |||||    
T  34996252 tagtgatatatgtacaactatttggtacaactttgatgacaactttcatttgctctctttt 34996312  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 9048208 - 9048271
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||| ||||||||||||| ||||||| ||||| || |||||| || |||| ||||||||    
T  9048208 tagtgatatttgtacaactcttttgtacaacatttatgacaactttatttctctctcttttgat 9048271  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 39153576 - 39153639
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||| ||| |||||| || |  ||||| |||||||| ||||||||    
T  39153576 tagtgatatatgtacaactctttagtataactttcatgataactttgattttctctcttttgat 39153639  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 404927 - 404873
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctc 172  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||  |||||||    
T  404927 tagtgatatttgtacaactctttggtacaacttttatgacaactttgtttttctc 404873  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 34157684 - 34157651
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttt 151  Q
    ||||||||||||||||||||||||||||||||||    
T  34157684 tagtgatatatgtacaactctttggtacaacttt 34157651  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 11570255 - 11570318
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||| |||||||||| || || |||||  | ||||| ||||||||    
T  11570255 tagtgatatatgtacaactctttcgtacaactttcatgacaacttttgtcttctctcttttgat 11570318  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 34002212 - 34002266
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctc 172  Q
    ||||||||||||||||||| ||||| |||||||| || || ||||| ||||||||    
T  34002212 tagtgatatatgtacaactatttgggacaactttgatcacaactttcattttctc 34002266  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 32811754 - 32811819
Alignment:
Q  116 aatagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||| ||||||||||||| |||||||||| || || |||||  ||||||| | ||||||    
T  32811754 aatagtgatatttgtacaactctttagtacaactttaatgacaactttggttttctctcatttgat 32811819  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 10302238 - 10302298
Alignment:
Q  121 tgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||| ||| ||||||||||||||||||||| || |  ||||| |||||||| ||||||||    
T  10302238 tgataaatggacaactctttggtacaactttcatgataactttgattttctctcttttgat 10302298  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 27102279 - 27102219
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctccctttt 178  Q
    |||| |||| |||||||||||||||||||||||| || || ||||| |||||||| |||||    
T  27102279 tagtaatatttgtacaactctttggtacaactttcatgacaactttgattttctctctttt 27102219  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 27144101 - 27144041
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctccctttt 178  Q
    |||| |||| |||||||||||||||||||||||| || || ||||| |||||||| |||||    
T  27144101 tagtaatatttgtacaactctttggtacaactttcatgacaactttgattttctctctttt 27144041  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 26391175 - 26391238
Alignment:
Q  118 tagtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    |||||||||||| |||||||||||||| |||||| || || |||||| ||||||  ||||||||    
T  26391175 tagtgatatatgaacaactctttggtataactttcatgacaactttagttttctatcttttgat 26391238  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 15098915 - 15098854
Alignment:
Q  120 gtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||| | ||||||||||||| ||| || ||||| |||||||| | ||||||    
T  15098915 gtgatatatgtacaattttttggtacaacttctatgacaactttgattttctctcatttgat 15098854  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 92126 - 92064
Alignment:
Q  119 agtgatatatgtacaactctttggtacaacttttataacgactttaattttctcccttttgat 181  Q
    ||||||||||||||||||||||| ||||| |||||| || | |||  ||||||| ||||||||    
T  92126 agtgatatatgtacaactctttgatacaatttttatgacaatttttgttttctctcttttgat 92064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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