View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0256_high_3 (Length: 451)
Name: NF0256_high_3
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0256_high_3
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 117 - 438
Target Start/End: Complemental strand, 44975884 - 44975561
Alignment:
Q
117
gaaccaaatcatagtattcaaaccaatttataattttgaatctctaactaaaggtcttgacaaagccacaacttctgatcatagtatttttt-atgaatt
215
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
T
44975884
gaaccaaatcatagtattcaaaccaatttataattttgaatctctaactaaaggtcttgacaacgccacaacttctgatcatagtatttttttatgaatt
44975785
T
Q
216
agacaccgattaataagtgtaaattccaatgaacatttttattttaaataaatgttagaaattttagagatttattgaagaattatcacttttaatagat
315
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
T
44975784
agacaccgattaataagtgtaaattccaatgaacatttttattttaaataaatgttagaaattttagagatttattgaacaattatcacttttaatagat
44975685
T
Q
316
tt-gggggaccaactgattgattccaaacaaagagagtcatacttaacgcgaaagctccttcctgagccaacacacaacataaccgttaaccactgctca
414
Q
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
T
44975684
tttgggggaccaactgattgattccaaacaaagagagtcatacttaacgcgaaagctccttcttgagccaacacacaacataaccgttaaccactgctca
44975585
T
Q
415
cgccaccaccggaatattcatctc
438
Q
||||||||||||||||||| ||||
T
44975584
cgccaccaccggaatattcttctc
44975561
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 40909147 - 40909182
Alignment:
Q
403
aaccactgctcacgccaccaccggaatattcatctc
438
Q
||||||||||||||||||||||||| ||||||||||
T
40909147
aaccactgctcacgccaccaccggagtattcatctc
40909182
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 44985185 - 44985150
Alignment:
Q
403
aaccactgctcacgccaccaccggaatattcatctc
438
Q
||||||||||||||||||||||||| ||||||||||
T
44985185
aaccactgctcacgccaccaccggagtattcatctc
44985150
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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