View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_high_7 (Length: 362)
Name: NF0256_high_7
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 94 - 361
Target Start/End: Original strand, 47298615 - 47298882
Alignment:
| Q |
94 |
aagcccccaactttatttaacagcaatcacgacattacaattttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtag |
193 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
47298615 |
aagcccccaactttatttaacagcaatcacgacagtacaattttacaaactacaacaaactataaggtagacatcgcaaaactaggagcactcaatgtag |
47298714 |
T |
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| Q |
194 |
gatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatt |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47298715 |
gatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccttt |
47298814 |
T |
|
| Q |
294 |
tatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccctatgctactccac |
361 |
Q |
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||||||||||||||||||||||||||||| ||||||||| | |||||||||||| | ||| ||||||| |
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| T |
47298815 |
tatattcttatatgggacgatataggttgctccaggaaaaggtccagccccaccttttgcaactccac |
47298882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 94 - 361
Target Start/End: Original strand, 47292016 - 47292275
Alignment:
| Q |
94 |
aagcccccaactttatttaacagcaatcacgacattacaattttacaaactacaacaaactataaggtagacatcgcaaaactaggaccactcggtgtag |
193 |
Q |
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| T |
47292016 |
aagcccccaactttatttaacaggaatcacgacattac--------aaactacaacaaactataaggtagacatcgcaaaattatgagcactcggtgtag |
47292107 |
T |
|
| Q |
194 |
gatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatt |
293 |
Q |
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| T |
47292108 |
gataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccatt |
47292207 |
T |
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| Q |
294 |
tatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccctatgctactccac |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
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| T |
47292208 |
tatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttgcaactccac |
47292275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 172 - 321
Target Start/End: Complemental strand, 47243258 - 47243109
Alignment:
| Q |
172 |
aaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggta |
271 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||| |||||||||| |
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| T |
47243258 |
aaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggta |
47243159 |
T |
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| Q |
272 |
acatcaaagtttcttctccatttatattcttatatgggacgatataggtt |
321 |
Q |
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| || || ||||||||| ||| |||||||| ||||| ||||||||| |
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| T |
47243158 |
atattaacccttcttctccttttgcattcttatgcgggacaatataggtt |
47243109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 347
Target Start/End: Complemental strand, 47284150 - 47283952
Alignment:
| Q |
149 |
caaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatc |
248 |
Q |
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|||||||||||||||| || |||||||||||||| ||| |||||| |||||||| ||||||| ||||| ||| ||||||| ||||||||||||||| | |
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| T |
47284150 |
caaactataaggtagagatgacaaaactaggaccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataac |
47284051 |
T |
|
| Q |
249 |
ttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccacc |
347 |
Q |
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|||||||| || ||||| |||| || ||| ||||||||| | | |||||||| ||||| ||||| |||| |||||| || | |||||||||||| |
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| T |
47284050 |
ttcagaggttaagaaaattagtaatattaaaccttcttctccttctgcattcttatgtgggattatatacgttgctccaggtaaaggtccagccccacc |
47283952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 346
Target Start/End: Complemental strand, 47268165 - 47267988
Alignment:
| Q |
170 |
caaaactagga-ccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattg |
268 |
Q |
| |
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||||||||||| ||||| | | |||| | |||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |
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| T |
47268165 |
caaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaacta |
47268066 |
T |
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| Q |
269 |
gtaacatcaaagtttcttctccatttatattcttatatgggacgatataggttgatccaggaaatgttccagccccac |
346 |
Q |
| |
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|||| || ||| ||||||||| | || |||||||| ||||| |||||||| || ||||||||| | |||||||||| |
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| T |
47268065 |
gtaatatgaaaccttcttctccttctacattcttatgtgggatgatataggctgctccaggaaaaggcccagccccac |
47267988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 148 - 272
Target Start/End: Complemental strand, 47257409 - 47257285
Alignment:
| Q |
148 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
247 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| ||||| ||||| || ||||||||||||||| |
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| T |
47257409 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatat |
47257310 |
T |
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| Q |
248 |
cttcagagggcaaacaaattggtaa |
272 |
Q |
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|||||| ||||| ||||||||||| |
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| T |
47257309 |
cttcaggaggcaagcaaattggtaa |
47257285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 315
Target Start/End: Complemental strand, 47279558 - 47279391
Alignment:
| Q |
148 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
247 |
Q |
| |
|
|||||||||||||| || || |||||||||| ||| | | |||||| |||||||||||||||| ||||| ||| ||||||| ||||||||||||||| |
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| T |
47279558 |
acaaactataaggtggagatgacaaaactaggcccaattgttgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataa |
47279459 |
T |
|
| Q |
248 |
cttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgata |
315 |
Q |
| |
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||||||||| || ||||| |||| |||||| ||||||||| | | |||||||| ||||| |||| |
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| T |
47279458 |
cttcagaggttaagaaaattagtaatatcaaaccttcttctccttctgcattcttatgtgggatgata |
47279391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 321
Target Start/End: Complemental strand, 32731949 - 32731776
Alignment:
| Q |
148 |
acaaactataaggtagacatcgcaaaactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatat |
247 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||| |
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| T |
32731949 |
acaaactataaggtagacaagatgaaactaggaccactcattgtaggacaattttggttaccaagcatatcatctaactctttagcaaacctcttcatat |
32731850 |
T |
|
| Q |
248 |
cttcagagggcaaacaaattggtaacatcaaagtttcttctccatttatattcttatatgggacgatataggtt |
321 |
Q |
| |
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|||||| |||||| |||||||| || || || ||||||||| ||| |||||||| ||||| ||||||||| |
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| T |
32731849 |
cttcagggggcaagcaaattggaaatattaacccttcttctccttttgcattcttatgcgggacaatataggtt |
32731776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 20519930 - 20519834
Alignment:
| Q |
173 |
aactaggaccactcggtgtaggatgattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaa |
272 |
Q |
| |
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||||| |||| |||| ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||| |||||||||| |
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|
| T |
20519930 |
aactatgacctctcgttgtaggatgat---ggttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggtaa |
20519834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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