View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0256_low_1 (Length: 607)
Name: NF0256_low_1
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_1 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 6 - 583
Target Start/End: Complemental strand, 48912073 - 48911496
Alignment:
| Q |
6 |
aagctggaccaagatgccaagctttgtggcaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattcc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48912073 |
aagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattcc |
48911974 |
T |
|
| Q |
106 |
gttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtgctgcattcatggcaatagaatgaggaagatgaggaatt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911973 |
gttacttttgaaaactgtctcaagaagcgcttccaataatttactcagctgcttcggtggtgctgcattcatggcaatagaatgaggaagatgaggaatt |
48911874 |
T |
|
| Q |
206 |
acaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagcaggtctaggaatttgta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48911873 |
acaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgta |
48911774 |
T |
|
| Q |
306 |
gcttgtttgcaagttcataaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccacggagtgttggatggttggtcggagtag |
405 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48911773 |
gcttgtttgcaagttcatgaacccaaggatacatgaaatcagccacgatgcaatctggtgggtgctgctccacgaagtgttggatggttggtcggagtag |
48911674 |
T |
|
| Q |
406 |
agtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtgaaggaaatgga |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48911673 |
agtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacgccatcggggaggcctactgcttgtgaaggaaatgga |
48911574 |
T |
|
| Q |
506 |
tcagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatg |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911573 |
acagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatg |
48911496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 48962745 - 48962834
Alignment:
| Q |
9 |
ctggaccaagatgccaagctttgtggcaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaa |
98 |
Q |
| |
|
||||||| ||||||||||| ||||| | || |||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
48962745 |
ctggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaa |
48962834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 48965833 - 48965887
Alignment:
| Q |
62 |
tactcttcaccgtcaagttcagcaaaattgttgacaaggattccgttacttttga |
116 |
Q |
| |
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|||||||| |||||||| ||||| ||||||||||||| || ||| |||||||||| |
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| T |
48965833 |
tactcttccccgtcaagctcagcgaaattgttgacaatgagtccattacttttga |
48965887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 48958595 - 48958671
Alignment:
| Q |
6 |
aagctggaccaagatgccaagctttgtggcaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttca |
82 |
Q |
| |
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|||| ||||||||||||||| | ||||| | || |||||| |||||||||||| |||||||||| ||||||||| |
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| T |
48958595 |
aagcaggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttca |
48958671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 583
Target Start/End: Complemental strand, 6239 - 5662
Alignment:
| Q |
6 |
aagctggaccaagatgccaagctttgtggcaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattcc |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |||||| |
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|
| T |
6239 |
aagccggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttcagaaaaattgttaacaatgattcc |
6140 |
T |
|
| Q |
106 |
gttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtgctgcattcatggcaatagaatgaggaagatgaggaatt |
205 |
Q |
| |
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||| ||||||||||| ||||| | |||||||||||| || | ||||| ||||||||| || |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
6139 |
gttgcttttgaaaaccgtctccaaaagcgcttccaataagtcactcatctgcttcggcggagctgcattcatggcaatagaatgaggaagaccaggaatt |
6040 |
T |
|
| Q |
206 |
acaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagcaggtctaggaatttgta |
305 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
6039 |
acaaatgaagcagattcataaagagagtgtgctttaacagattctatggcacaaattgcaaacagagagaaaccgttgaaactgagtctaggaatttgaa |
5940 |
T |
|
| Q |
306 |
gcttgtttgcaagttcataaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccacggagtgttggatggttggtcggagtag |
405 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||| || || |||||||| |||||||||||||||||| |||||||||||| |||| |||| || |
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|
| T |
5939 |
gcttgtttgcaagttcatcaacccaaggaaacaagaaatccgccacaatgcaatccggtgggtgctgctccacgaagtgttggatgggtggttggaggag |
5840 |
T |
|
| Q |
406 |
agtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtgaaggaaatgga |
505 |
Q |
| |
|
||||| ||| || |||| ||| || || ||||||||||||| || | ||||| |||||| ||||| |||||||| ||| | || |||||||||||| |
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|
| T |
5839 |
agtggtggcttgaaagatcttgcgaagattctcgaggtcggtggcggcggagaggctttcgacgccatcagggaggccaacttcatgggaaggaaatgga |
5740 |
T |
|
| Q |
506 |
tcagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatg |
583 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5739 |
acggtgtgaatacggaggtgttggtttaaagggatggatttgccaaggatttgagcattggagggtgtggttatgatg |
5662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 583
Target Start/End: Complemental strand, 10223 - 9646
Alignment:
| Q |
6 |
aagctggaccaagatgccaagctttgtggcaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattcc |
105 |
Q |
| |
|
||||||||| ||||||||||||||| || | |||||||||| |||||||||||| | || || |||||||||||| ||||||| ||||||||||| || |
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|
| T |
10223 |
aagctggactaagatgccaagctttctgacccgtagttttcttgtagtgttcgatgtgctatttaccgtcaagttctacaaaattattgacaaggatccc |
10124 |
T |
|
| Q |
106 |
gttacttttgaaaactgtctcaagaagcgcttccaacaatttactcagctgcttcggtggtgctgcattcatggcaatagaatgaggaagatgaggaatt |
205 |
Q |
| |
|
| |||||||||||| |||| | | || || |||| | || ||||| |||||| || |||| |||||||||| ||||||||||||||||| ||||||| |
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|
| T |
10123 |
ttgacttttgaaaaccatctccaaacgctctcccaagatttcactcatctgcttaggcggtgttgcattcatgacaatagaatgaggaagaccaggaatt |
10024 |
T |
|
| Q |
206 |
acaaaagaagcagattcataaagagagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagcaggtctaggaatttgta |
305 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |
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|
| T |
10023 |
acaaaagaagcatatccataaagtgagtgtgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagagagtcttggaatttgaa |
9924 |
T |
|
| Q |
306 |
gcttgtttgcaagttcataaacccaaggatacatgaaatcagcgacgatgcaatctggtgggtgctgctccacggagtgttggatggttggtcggagtag |
405 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| ||||| | ||||||||||| |||||||||||||||||| |||||||||||| ||||||||| || |
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|
| T |
9923 |
gcttgtttgcaagttcatcaacccaaggaaacaaaaaatctgtcacgatgcaatccggtgggtgctgctccacgaagtgttggatgggtggtcggaggag |
9824 |
T |
|
| Q |
406 |
agtggctgctcgatagattttggtgaggttgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtgaaggaaatgga |
505 |
Q |
| |
|
||||| ||| || |||||||| | ||| | || ||| |||| || |||| ||| ||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
9823 |
agtggtagcttgaaagattttgaccatgttattgaagtcagtggcggcagagagactttctacaccgtcggggaggcctacttcttgggaaggaaatgga |
9724 |
T |
|
| Q |
506 |
tcagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatg |
583 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9723 |
acagtgtgaatacggagatgttggtttaaagggatagatttgccaaggatttgagcgttggaaggtgtggttatgatg |
9646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 379
Target Start/End: Complemental strand, 948 - 814
Alignment:
| Q |
245 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaggtctaggaatttgtagcttgtttgcaagttcataaacccaaggatacatgaaat |
344 |
Q |
| |
|
|||||||||||||| || | ||| || |||||||||||||| ||| ||| ||||| || ||||||||||| || |||| |||||||| | | |||| |
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|
| T |
948 |
gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaat |
849 |
T |
|
| Q |
345 |
cagcgacgatgcaatctggtgggtgctgctccacg |
379 |
Q |
| |
|
| || ||||||||||| ||||| | ||| |||||| |
|
|
| T |
848 |
ccgctacgatgcaatcaggtggttcctgttccacg |
814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 12589897 - 12589787
Alignment:
| Q |
6 |
aagctggaccaagatgccaagctttgtggcaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggattcc |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||| | || |||||||| ||||||| || | |||||| || ||||||||||| || ||||| |||| || ||| |
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|
| T |
12589897 |
aagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagtcc |
12589798 |
T |
|
| Q |
106 |
gttacttttga |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
12589797 |
attacttttga |
12589787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 12541137 - 12541222
Alignment:
| Q |
10 |
tggaccaagatgccaagctttgtggcaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttga |
95 |
Q |
| |
|
|||||||||||||||||| ||||| | || |||||||||||||||| || | ||||||| || ||||||||| |||| ||||||| |
|
|
| T |
12541137 |
tggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttga |
12541222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 28385786 - 28385871
Alignment:
| Q |
10 |
tggaccaagatgccaagctttgtggcaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttga |
95 |
Q |
| |
|
|||||||||||||||||| ||||| | || |||||||||||||||| || | ||||||| || ||||||||| |||| ||||||| |
|
|
| T |
28385786 |
tggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttga |
28385871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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