View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_15 (Length: 346)
Name: NF0256_low_15
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 26234903 - 26235241
Alignment:
| Q |
1 |
acattggtgagccaagttttgtaaatgattatttacctcttttggttcaacttggattcatttacactgtccctcttcatgttcttgaattcttttctgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26234903 |
acattggtgagccaagttttgtaaatgattatttacctcttttgattcaacttggattcatttacactgtccctcttcatgttcttgaattcttttctgc |
26235002 |
T |
|
| Q |
101 |
tgtaataactattggtttggcctcaaaattgagttcagaagagaatcacaacgacacgagtctcatgagtatcaaacacatgtttcaaaactccaatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26235003 |
tgtaataactattggtttggcctcaaaattgagttcagaagagaatcacaacgacacgagtctcatgagtatcaaacacatgtttcaaaactccaatgac |
26235102 |
T |
|
| Q |
201 |
atatcaatcatgaaaagaacatttactacttctttgtatatgcttgcattatcatttggtctccttattgcatgcccgtggacagtgatcggtacttgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26235103 |
atatcaatcatgaaaagaacatttactacttctttgtatatgcttgcattatcatttggtctccttattgcatgcccgtggacagtgatcggtacttgtt |
26235202 |
T |
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| Q |
301 |
atggtctgtatagtgcttttgggtgctatatattcttcg |
339 |
Q |
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| T |
26235203 |
atggtctgtatagtgcttttgggtgctatatatttttcg |
26235241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 17845190 - 17845250
Alignment:
| Q |
40 |
ttttggttcaacttggattcatttacactgtccctcttcatgttcttgaattcttttctgc |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||| |
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| T |
17845190 |
ttttggttcaacttggattcatttacgttgtccctcttcatgttctagaattctgttctgc |
17845250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 273
Target Start/End: Original strand, 37672742 - 37672850
Alignment:
| Q |
165 |
atgagtatcaaacacatgtttcaaaactccaatgacatatcaatcatgaaaagaacatttactacttctttgtatatgcttgcattatcatttggtctcc |
264 |
Q |
| |
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|||||| ||||||||||||||||||| || | ||| | |||| ||||||| ||||||||| ||||||||||||| |||||||||||| | |||| | |
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| T |
37672742 |
atgagtctcaaacacatgtttcaaaattcaattgatgtgtcaaccatgaaaggaacatttatcacttctttgtatacacttgcattatcaaattgtcttc |
37672841 |
T |
|
| Q |
265 |
ttattgcat |
273 |
Q |
| |
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||||||||| |
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|
| T |
37672842 |
ttattgcat |
37672850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 37672617 - 37672681
Alignment:
| Q |
34 |
tacctcttttggttcaacttggattcatttacactgtccctcttcatgttcttgaattcttttct |
98 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||| ||||||||||| | || ||||||| |||| |
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| T |
37672617 |
tacctcttttgattcaacttggatttatttacactatccctcttcatttcctagaattctgttct |
37672681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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