View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_16 (Length: 341)
Name: NF0256_low_16
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 41 - 332
Target Start/End: Complemental strand, 13590696 - 13590403
Alignment:
| Q |
41 |
tcactactctaataaatgaaaactaatagcaataaggtaacgtatttaatttacattaagatgtggttcaaataaaatatat--taaaaaattgaaatct |
138 |
Q |
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| T |
13590696 |
tcactactctaataaatgaaaaataatagcaataaggtaacgtatttaatttacattaagatgtggttcaaataaaatatatattgaaaaattgaaatct |
13590597 |
T |
|
| Q |
139 |
accttgtattgttgcatagcaaacaattcaacatcctagaccaagctatccttaaacgaggataaattctgttgctatatgttgttgattccctcataac |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13590596 |
accttgtattgttgcatagcaaacaattcaacatcctagaccaagctatccttaaacgaggataaattctgttgctatatgttgttgattccctcataac |
13590497 |
T |
|
| Q |
239 |
agattccatggtttctacaaataggttcaagcttcttattggtggaatataaagtgttaaaggaacaacagagaaagccactgtgaagtataat |
332 |
Q |
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| T |
13590496 |
agattccatggtttctacaaataggttcaagcttcttattggtggaatataaagtgttaaaggaacaacagagaaagccactgtgaagaataat |
13590403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 9190647 - 9190723
Alignment:
| Q |
242 |
ttccatggtttctacaaataggttcaagcttcttattggtggaatataaagtgttaaaggaacaacagagaaagcca |
318 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| |||||||||||| |
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| T |
9190647 |
ttccatggtttccacaaaagaattcaagcttctgattggtggaatatagagaattaaaggaacagcagagaaagcca |
9190723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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