View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_18 (Length: 326)
Name: NF0256_low_18
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 3429427 - 3429239
Alignment:
| Q |
1 |
catgtgtcaattatgcatttaatttgtaaacatgaaacaccattgtaccattcaacttatgtaaacctccaggtggttcaaacgcaagagttaaatgggt |
100 |
Q |
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| T |
3429427 |
catgtgtcaattatgcatttaatttgtaaacatgaaacaccattgtaccattcaacttatgtaaacctccaggtggttcaaacgcaagagttaaatgggt |
3429328 |
T |
|
| Q |
101 |
cctctaggctctaagcatggaaggagtgttagacttgacagagacttgagcctaaattgtggaaaacaaagatgtaaacaaacacaaag |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429327 |
cctctaggctctaagcatggaaggagtgttagacttgacagagacttgagcctaaattgtggaaaacaaagatgtaaacaaacacaaag |
3429239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 186 - 299
Target Start/End: Complemental strand, 3428478 - 3428365
Alignment:
| Q |
186 |
aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatagagggaaagttaggagat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3428478 |
aaagtaaaaataggtatagtaatggcactagaaaaggtttccttacatgatatacataactgttctagaaaaatagaaaatatagggaaagttaggagat |
3428379 |
T |
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| Q |
286 |
caaggagcaaaaac |
299 |
Q |
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|||||||||||||| |
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| T |
3428378 |
caaggagcaaaaac |
3428365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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