View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_22 (Length: 298)
Name: NF0256_low_22
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 10029639 - 10029850
Alignment:
| Q |
7 |
gttgctcggtttagattcaatttcgcttgcttcaattcccttaaaattaagcctggattcgccgaattggaaggaacacgacttccatggttctcctttt |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
10029639 |
gttgttcggtttagattcaatttcgcttgcttcaattcccttaaaattaagcctggactcgccgaattggaaggaacacgactcccatggttttcctttt |
10029738 |
T |
|
| Q |
107 |
cttcttcttttttctcgttctccttatcctcacacaaattcaacttaatgttcaaatttgccgcagattcttcttctgcttgtagctttgatttcagatt |
206 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10029739 |
cttcttcttttttctcgttctccttatcatcacacaaattcaacttaatgttcaaatttgcctcagattcttcttctgcttgtagctttgatttcagatt |
10029838 |
T |
|
| Q |
207 |
ttcaacaagcct |
218 |
Q |
| |
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|||||||||||| |
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| T |
10029839 |
ttcaacaagcct |
10029850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 10029897 - 10029965
Alignment:
| Q |
220 |
ttaacgataagctctttctccaaatccacagcctgttcctccaattttccagcatcaagctcttctgtg |
288 |
Q |
| |
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|||| |||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||||| |
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| T |
10029897 |
ttaatgataagctctttctccaatttcactgcttgttcctccaattttccagcatcaagctcttctgtg |
10029965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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