View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_24 (Length: 291)
Name: NF0256_low_24
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_24 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 15 - 173
Target Start/End: Complemental strand, 43434951 - 43434793
Alignment:
| Q |
15 |
agtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaatcatgttgggttttgaagaaaaa |
114 |
Q |
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| T |
43434951 |
agtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcattggtaaaaacacgctccaaaatcatgttgggttttgaagaaaaa |
43434852 |
T |
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| Q |
115 |
tagtgtttttgatgattgttgtgaaaacataacaaatctttgaatcgattcaaaagagg |
173 |
Q |
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| T |
43434851 |
tagtgtttttgatgattgttgtgaaaacataacaaatctttggatcggttcaaaagagg |
43434793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 43440817 - 43440691
Alignment:
| Q |
16 |
gtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaatcatgttgggttttgaagaaaaat |
115 |
Q |
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| T |
43440817 |
gtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaaaaac |
43440718 |
T |
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| Q |
116 |
agtgtttttgatgattgttgtgaaaac |
142 |
Q |
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| T |
43440717 |
agtgtttttgatgattgttgtgaaaac |
43440691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 43426445 - 43426320
Alignment:
| Q |
16 |
gtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaatcatgttgggttttgaagaaaaat |
115 |
Q |
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| T |
43426445 |
gtcaatgattcacgacattcttcaaattctttctctaactcttcagaccaatcattggtgtaaacacgctctaaaattgagttgggttttgaagaaaaat |
43426346 |
T |
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| Q |
116 |
agtgtttttgatgattgttgtgaaaa |
141 |
Q |
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| T |
43426345 |
agtgttttttatgactgttgtgaaaa |
43426320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 20408 - 20220
Alignment:
| Q |
56 |
cttgagaccaatcattggtaaaaacacgctctaaaatcatgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatcttt |
155 |
Q |
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| T |
20408 |
cttgagaccaatcattggtaaaaacacgctctaaaatcatgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatcttt |
20309 |
T |
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| Q |
156 |
gaatcgattc--------------aaaagaggaagaagaaaagtgagaaacctggttcaagttccgagctgcgagaactcgtgatgatg |
230 |
Q |
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| T |
20308 |
ggatcgattccaaagagggagtgaaaaagaggaagaagaaaagtgagaaacctggttctggttccgagctgtgagaactcgggatgatg |
20220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 41930497 - 41930402
Alignment:
| Q |
16 |
gtcaatgattcacgacattcttccaactctttctctaactcttgagaccaatcattggtaaaaacacgctctaaaatcatgttgggttttgaagaa |
111 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41930497 |
gtcaatgattcacgacatgcttccaactctttctctaactcttcagaccaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaa |
41930402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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