View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_26 (Length: 260)
Name: NF0256_low_26
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_26 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 89 - 260
Target Start/End: Complemental strand, 31699193 - 31699022
Alignment:
| Q |
89 |
ggtctaactctacttgcccatccctcctccataccgctttcctaatgggatttcagtttttacattgctgtatacctatcaacagactccgttcatctgc |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
31699193 |
ggtctaactctacttgcccatccctcctccataccgctttcctaatgggatttcagtttttgcattgctgtatacctatcaacagactccgttcatcagc |
31699094 |
T |
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| Q |
189 |
aatctaattatattccccatgccacacttaataagttcctaccatacctcataacaaggatttaagaacatc |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31699093 |
aatctaattatattccccatgccacacttaataagttcctaccctacctcataacaaggatttaagaacatc |
31699022 |
T |
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