View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0256_low_28 (Length: 258)

Name: NF0256_low_28
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0256_low_28
NF0256_low_28
[»] chr3 (10 HSPs)
chr3 (25-157)||(6787326-6787458)
chr3 (115-214)||(6943404-6943503)
chr3 (1-83)||(6943326-6943408)
chr3 (10-83)||(6940139-6940212)
chr3 (115-214)||(6940208-6940306)
chr3 (133-223)||(6234011-6234101)
chr3 (193-230)||(6787288-6787325)
chr3 (84-177)||(6859391-6859485)
chr3 (133-197)||(6138905-6138969)
chr3 (131-206)||(6164220-6164295)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 6787458 - 6787326
Alignment:
Q  25 tcatgaaaaggtattggattttccataaacgtccgggaggttagaaaacagaagaagctgatttagaaaacttggctgttaagagaggacaagctcttgc 124  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||| || |||||||||| |||||||||| |||||||| |||||| ||||||||    
T  6787458 tcatgaaaaggaattggatattccataaacgtccgggaggttagcaaacaaaacaagctgattttgaaaacttggttgttaagacaggacatgctcttgc 6787359  T
Q  125 agttactttgttcttcaactgcaatctctcctt 157  Q
    ||||||||||||||||| ||||||||| |||||    
T  6787358 agttactttgttcttcagctgcaatctatcctt 6787326  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 6943404 - 6943503
Alignment:
Q  115 aagctcttgcagttactttgttcttcaactgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaat 214  Q
    ||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||    
T  6943404 aagctcttgcagttactttgttcttgagatgcaatctctccttgacactgatgatgaaatggttgagagggtctcaccagcagaatcagcatctaccaat 6943503  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6943326 - 6943408
Alignment:
Q  1 ttaccttatgataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagaaaacagaagaagct 83  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6943326 ttacctcatgataattacaggcattcatgaagaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 6943408  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 6940139 - 6940212
Alignment:
Q  10 gataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagaaaacagaagaagct 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6940139 gataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct 6940212  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 6940208 - 6940306
Alignment:
Q  115 aagctcttgcagttactttgttcttcaactgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaat 214  Q
    |||||||| ||||||||| ||||||||  ||||||||||||||| ||||||||||||  |||||| |||  ||||||||||||||| |||||||||||||    
T  6940208 aagctctttcagttactt-gttcttcagatgcaatctctccttgacactgatgatgagatggttgagaggatctcaccagcagaatgagcatctaccaat 6940306  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 223
Target Start/End: Original strand, 6234011 - 6234101
Alignment:
Q  133 tgttcttcaactgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcatctaccaatctgaagaga 223  Q
    ||||||||| ||||| |||||||| ||| ||||||||||| ||| ||||||  |||||||||||| | |||||| || ||||||| |||||    
T  6234011 tgttcttcagctgcattctctcctcgccgctgatgatgaaatggctgggagaatctcaccagcaggaccagcatttatcaatctgcagaga 6234101  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 6787325 - 6787288
Alignment:
Q  193 agcagaatcagcatctaccaatctgaagagaacacagt 230  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6787325 agcagaatcagcatctaccaatctgaagagaacacagt 6787288  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 177
Target Start/End: Complemental strand, 6859485 - 6859391
Alignment:
Q  84 gatttagaaaacttggctgttaagagaggacaagctcttgcagttactt-tgttcttcaactgcaatctctccttgccactgatgatgaattggt 177  Q
    ||||| ||||||||| |||| |||| |||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||| |||||||||||| ||||    
T  6859485 gattttgaaaacttgcctgtcaagacaggagatgctgttgcaatttcttctgttcttcagctgcattctctccttgctactgatgatgaaatggt 6859391  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 6138905 - 6138969
Alignment:
Q  133 tgttcttcaactgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcag 197  Q
    ||||||||| ||||| ||||||||  |||||||||||||| ||| ||||||  ||||||||||||    
T  6138905 tgttcttcagctgcattctctcctcaccactgatgatgaaatggctgggagaatctcaccagcag 6138969  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 6164220 - 6164295
Alignment:
Q  131 tttgttcttcaactgcaatctctccttgccactgatgatgaattggttgggagtgtctcaccagcagaatcagcat 206  Q
    ||||||||||| ||||| |||||||| |||||||| ||||||  || ||||||  |||||||||||| | ||||||    
T  6164220 tttgttcttcagctgcattctctcctcgccactgacgatgaaacggctgggagaatctcaccagcaggaccagcat 6164295  T

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