View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_29 (Length: 257)
Name: NF0256_low_29
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 34178448 - 34178679
Alignment:
| Q |
1 |
tgtaggccacacaaaaaatattaatgcttttattttagcatctcacatcaataaacaccttctactttgtctcctcaatgga--tatgt---gcaaccaa |
95 |
Q |
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| T |
34178448 |
tgtaggccacacaaaaaatattaatgcttttatttgagcatctcacctcaataaacaccttctactttgtctcctcaatagaggtatctatggcaaccaa |
34178547 |
T |
|
| Q |
96 |
tgcttactgtgttaggctccttccattcaagatgatcctatagaaacatatcataagatgaaatatattttnnnnnnngggaaatgctagatactgtgaa |
195 |
Q |
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| T |
34178548 |
tgcttactgtgttaggctccttccattcaagatgatcctatagaaacatatcataagatgaaatatattttaaaaaaagggaaatgcta-atactgtgaa |
34178646 |
T |
|
| Q |
196 |
agcgagttcgtaaagtgttcgtgaatttgttga |
228 |
Q |
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| T |
34178647 |
agcaagttcgtaaagtgttcgtgaatttgttga |
34178679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 34150420 - 34150588
Alignment:
| Q |
1 |
tgtaggccacacaaaaaatattaatgcttttattttagcatctcacatcaataaacaccttctactttgtctcctcaatgga------tatgtgcaacca |
94 |
Q |
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| T |
34150420 |
tgtaggccacacaaaatata--agtgcttatatttaagaatctcaactcaataaacaccttctactttttctcctccatggaggtatctatgtgcaacca |
34150517 |
T |
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| Q |
95 |
atgcttactgtgttaggctccttccattcaagatgatcctatagaaacatatcataagatgaaatatattt |
165 |
Q |
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| T |
34150518 |
atgcttattgtgttaggctccttccattgaaaatggtcctataaaaacatgtcgtaaaatgaaatatattt |
34150588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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