View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0256_low_3 (Length: 512)

Name: NF0256_low_3
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0256_low_3
NF0256_low_3
[»] chr1 (13 HSPs)
chr1 (197-426)||(15245066-15245295)
chr1 (9-135)||(15244878-15245004)
chr1 (197-371)||(21502664-21502838)
chr1 (4-130)||(47899696-47899822)
chr1 (199-367)||(19882154-19882323)
chr1 (197-367)||(33079571-33079740)
chr1 (197-357)||(26661258-26661418)
chr1 (210-371)||(39439738-39439889)
chr1 (205-258)||(6243434-6243487)
chr1 (199-256)||(15878560-15878617)
chr1 (307-356)||(6244934-6244983)
chr1 (45-132)||(21502511-21502598)
chr1 (44-130)||(26661109-26661195)
[»] chr8 (7 HSPs)
chr8 (208-371)||(25234481-25234644)
chr8 (199-368)||(2637240-2637409)
chr8 (204-320)||(15257313-15257429)
chr8 (210-375)||(12566243-12566408)
chr8 (208-258)||(13094226-13094276)
chr8 (207-257)||(30143790-30143840)
chr8 (282-346)||(7636086-7636150)
[»] chr7 (20 HSPs)
chr7 (197-371)||(19589837-19590011)
chr7 (197-346)||(40504401-40504550)
chr7 (199-375)||(7229420-7229595)
chr7 (199-367)||(20176373-20176541)
chr7 (199-375)||(23104438-23104614)
chr7 (206-334)||(9260485-9260613)
chr7 (206-334)||(9309681-9309809)
chr7 (210-346)||(29541340-29541476)
chr7 (218-375)||(16299486-16299642)
chr7 (206-371)||(5048333-5048500)
chr7 (4-129)||(984841-984966)
chr7 (4-86)||(19589538-19589620)
chr7 (58-132)||(29541554-29541628)
chr7 (197-270)||(2475788-2475861)
chr7 (284-333)||(24422507-24422556)
chr7 (9-107)||(2475951-2476049)
chr7 (204-258)||(45957561-45957615)
chr7 (296-341)||(16259184-16259229)
chr7 (216-244)||(24422462-24422490)
chr7 (207-279)||(26571972-26572044)
[»] chr5 (7 HSPs)
chr5 (197-375)||(16511885-16512063)
chr5 (199-367)||(13808003-13808178)
chr5 (197-367)||(24884159-24884329)
chr5 (11-64)||(17469482-17469535)
chr5 (218-303)||(43581786-43581871)
chr5 (210-241)||(12121625-12121656)
chr5 (37-111)||(43587492-43587566)
[»] chr4 (18 HSPs)
chr4 (206-371)||(12109123-12109289)
chr4 (199-368)||(41953450-41953619)
chr4 (199-375)||(7703286-7703461)
chr4 (204-371)||(19940101-19940265)
chr4 (205-334)||(8913210-8913339)
chr4 (204-371)||(23154404-23154572)
chr4 (204-258)||(20572296-20572350)
chr4 (9-132)||(12109363-12109486)
chr4 (37-132)||(19940337-19940432)
chr4 (11-130)||(23154212-23154331)
chr4 (204-243)||(50980218-50980257)
chr4 (291-371)||(10180139-10180219)
chr4 (210-258)||(51462367-51462415)
chr4 (197-259)||(4225910-4225972)
chr4 (197-370)||(11488366-11488536)
chr4 (204-253)||(7354055-7354104)
chr4 (276-342)||(9274526-9274592)
chr4 (204-318)||(21799121-21799235)
[»] chr3 (12 HSPs)
chr3 (286-371)||(3285484-3285569)
chr3 (214-370)||(863653-863808)
chr3 (281-371)||(3257957-3258047)
chr3 (28-132)||(863086-863190)
chr3 (266-371)||(32201852-32201957)
chr3 (214-371)||(16217201-16217358)
chr3 (286-371)||(3404637-3404722)
chr3 (204-253)||(27902923-27902972)
chr3 (286-334)||(3256747-3256795)
chr3 (199-370)||(4776621-4776789)
chr3 (307-371)||(3388956-3389020)
chr3 (286-366)||(3404377-3404457)
[»] chr2 (13 HSPs)
chr2 (199-371)||(25894086-25894257)
chr2 (197-375)||(30972983-30973161)
chr2 (197-341)||(24576766-24576910)
chr2 (199-371)||(33854997-33855174)
chr2 (284-367)||(5370927-5371010)
chr2 (277-367)||(17270528-17270618)
chr2 (214-362)||(27466487-27466634)
chr2 (214-332)||(9789569-9789687)
chr2 (320-371)||(13231922-13231973)
chr2 (282-369)||(34063496-34063583)
chr2 (12-74)||(27466751-27466813)
chr2 (284-335)||(17557685-17557736)
chr2 (199-318)||(16341437-16341556)
[»] chr6 (7 HSPs)
chr6 (226-334)||(7117771-7117877)
chr6 (205-256)||(21671025-21671076)
chr6 (205-256)||(21678441-21678492)
chr6 (225-334)||(7130155-7130262)
chr6 (282-357)||(5988150-5988225)
chr6 (90-134)||(7118012-7118056)
chr6 (90-134)||(7130396-7130440)
[»] scaffold0037 (1 HSPs)
scaffold0037 (218-303)||(108198-108283)
[»] scaffold0004 (1 HSPs)
scaffold0004 (209-258)||(120404-120453)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 197 - 426
Target Start/End: Original strand, 15245066 - 15245295
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15245066 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttatagctcatcagtctatgtgggatcgatatc 15245165  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttgggaaacagtgaaaatcccggtgttgttc 396  Q
    ||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||  |||||||||||| || |||||||||||||||||||| |||    
T  15245166 tttttatgctataacttggaccgtgtatacttgcacttaatctttccacccttaaatatacatagtgttttgagagacagtgaaaatcccggtgttattc 15245265  T
Q  397 ttgttactcccttattgaatggttccaatt 426  Q
    ||||||||||||| |||||||||| |||||    
T  15245266 ttgttactcccttgttgaatggtttcaatt 15245295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 15244878 - 15245004
Alignment:
Q  9 tgcttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtc 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  15244878 tgcttaacatgaaggatgggtgaaacacctcctagtggccaccaggttgccaggaagccataaaaagctatagctatgtagatcgtagcaaagctctgtc 15244977  T
Q  109 atagttgattctttgtttaaaccatga 135  Q
    | |||||||||||||||||||||||||    
T  15244978 acagttgattctttgtttaaaccatga 15245004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 197 - 371
Target Start/End: Original strand, 21502664 - 21502838
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| |||||||||||||| |||||||||||| ||||||||||  | |||||||| |||||  |||| ||||||  ||||  |||||||||| |||||    
T  21502664 attgttgtgacaaatgatttactttattttcttggaaacaagtttattactggaaaggtataaagagttatagctccccagttcatgtgggatcaatatc 21502763  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    ||||||| |  ||||||||||| |||||||||  ||| | |||||||| | | ||||||||||||||||||||||    
T  21502764 tttttatactgtaacttggacaatgtatacttaaactaagtctttccatcttaaaatactcatagtgttttggga 21502838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 47899822 - 47899696
Alignment:
Q  4 tcacctgcttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagct 103  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||||||| ||| ||| ||||||||| |||||| || || || |||| |||| ||||||    
T  47899822 tcacgtgcttaacataaaggttgggtgaaacacctcctagtggccaccaagtttccatgaagccatagaaagctatatctctatagattgtagtaaagct 47899723  T
Q  104 ctgtcatagttgattctttgtttaaac 130  Q
    |||||||||||||||||||||||||||    
T  47899722 ctgtcatagttgattctttgtttaaac 47899696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 199 - 367
Target Start/End: Complemental strand, 19882323 - 19882154
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcag--tctatgtgggatcgatatc 296  Q
    |||| |||||||||||||| ||||| |||||||||| |||||||||  || ||| ||||| |||||| ||||||  ||   ||  ||| ||||||||||     
T  19882323 tgttgtgacaaatgatttactttatattcttgcaaataagttttctattgaaaatctatacgaagttatagctccacacaatccttgtaggatcgatat- 19882225  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgtttt 367  Q
    ||||||  | ||| |||||||| |||||||||||||||| |||||||||| | ||||||||||||||||||    
T  19882224 tttttagactatagcttggacagtgtatacttgcacttagtctttccaccttaaaatactcatagtgtttt 19882154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 367
Target Start/End: Original strand, 33079571 - 33079740
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||| |  ||||||||||   || | |||||| | |||| |||||| |||| ||||    
T  33079571 attgttgtgacaaataatttattttattctcttgcaaacaagttttctacaagaaagctatagagagctatagctcct-agtccatgtggaatcgttatc 33079669  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgtttt 367  Q
    |||||||   |||||||||| | || ||||||||||| |||  ||||||| | ||||||||||||| ||||    
T  33079670 tttttataatataacttggatagtgcatacttgcactaaattattccaccttaaaatactcatagtatttt 33079740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 26661258 - 26661418
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||   || | |||||     |||  | || ||||||||||    
T  26661258 attgttgtgacaaatgatttattttattttcttgcaaataagttttctactggaaagatatagagagctatagcttcgtggtccttatgcgatcgatatc 26661357  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactc 357  Q
    ||||||| | |||||||||| | |||||||||||||| | |||||||| | | ||||||||    
T  26661358 tttttatactataacttggatagtgtatacttgcactaagtctttccatcttaaaatactc 26661418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 371
Target Start/End: Complemental strand, 39439889 - 39439738
Alignment:
Q  210 atgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccata 309  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||          ||||  ||||| | |||  ||| |||| ||||||| | |||    
T  39439889 atgatttattttattttcttgcaaacaagttttctactcgaaagttata----------gctccccagtccacgtgaaatcaatatttttttatactata 39439800  T
Q  310 acttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    ||||||||| |||||||||||||| ||  |||||||| | ||||||||||||||||||||||    
T  39439799 acttggacagtgtatacttgcactcaacatttccaccttaaaatactcatagtgttttggga 39439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 6243434 - 6243487
Alignment:
Q  205 gacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctata 258  Q
    ||||||| | ||||||||||||||||| |||||||||||| |||||||||||||    
T  6243434 gacaaataacttattttattttcttgcgaacaagttttctactggaaagctata 6243487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 15878560 - 15878617
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagcta 256  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||| || ||||||||    
T  15878560 tgttataacaaatgatttatttcattttattgcaaacaagttttctactagaaagcta 15878617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 6244934 - 6244983
Alignment:
Q  307 ataacttggacattgtatacttgcacttaatctttccacccttaaatact 356  Q
    |||||||||||| |||||| |||||||||||||||| || ||||||||||    
T  6244934 ataacttggacaatgtatatttgcacttaatctttctactcttaaatact 6244983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 21502511 - 21502598
Alignment:
Q  45 ggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtcatagttgattctttgtttaaacca 132  Q
    |||||||||||||||||||| ||||| |||| | ||||| |  ||||||||| ||| || |||||||  |||  ||||||||||||||    
T  21502511 ggccaccaggttgccaggaaaccatagaaagttatagctttgtagatcgtagtaaaactttgtcataactgaagctttgtttaaacca 21502598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 26661109 - 26661195
Alignment:
Q  44 tggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtcatagttgattctttgtttaaac 130  Q
    |||||||| |||||||| ||||||||| |||  | |||||||| ||||||||| |||||| | |||||  ||||  |||||||||||    
T  26661109 tggccacctggttgccatgaagccatagaaatatatagctatatagatcgtagtaaagctttatcataactgatgttttgtttaaac 26661195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 208 - 371
Target Start/End: Original strand, 25234481 - 25234644
Alignment:
Q  208 aaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgcca 307  Q
    ||||||||||||||||||||||||||||||||||||| |||||||  |||| |||||| ||||||  |||||  ||||||||| |||||||||||| | |    
T  25234481 aaatgatttattttattttcttgcaaacaagttttctactggaaaattataggaagttatagctccacagtccctgtgggatcaatatctttttatacta 25234580  T
Q  308 taacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    ||| ||||||| ||||||||||  || | |||||||| | | ||||||||||| ||||||||||    
T  25234581 taaattggacaatgtatacttgacctaagtctttccagcttaaaatactcataatgttttggga 25234644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 199 - 368
Target Start/End: Original strand, 2637240 - 2637409
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctt 298  Q
    |||| |||||||||||||||||||||||||| |||||| ||||| || || |||| ||||  ||||| | ||||  |||||  |||| ||||||| ||||    
T  2637240 tgttgtgacaaatgatttattttattttcttacaaacatgttttatgttgaaaagttatataaagttatggctccacagtccctgtgagatcgatgtctt 2637339  T
Q  299 tttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttg 368  Q
    ||||| | || ||||||||| |||||| ||| ||| ||  |||||||| | ||||||||||||| |||||    
T  2637340 tttatactatcacttggacaatgtatatttgaactcaacttttccaccttaaaatactcatagtattttg 2637409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 204 - 320
Target Start/End: Complemental strand, 15257429 - 15257313
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttat 303  Q
    ||||||||| ||||||||||||| || |||| ||||||||||||| | ||||||  |||||| ||||||   ||||  ||||||| ||||||| ||||||    
T  15257429 tgacaaatgttttattttatttttttccaaataagttttctgctgaatagctatttgaagttatagctccagagtccttgtgggaccgatatccttttat 15257330  T
Q  304 gccataacttggacatt 320  Q
     ||||||||||||||||    
T  15257329 accataacttggacatt 15257313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 375
Target Start/End: Complemental strand, 12566408 - 12566243
Alignment:
Q  210 atgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccata 309  Q
    |||||||||||||||||||| |||||||||| | | || |||||||||| |||  | |||| |  ||||| |||  |||| |||| ||||||||   |||    
T  12566408 atgatttattttattttcttacaaacaagttatttactagaaagctatatgaatctatagcgccacagtccatgaaggattgataactttttatattata 12566309  T
Q  310 acttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttgggaaaca 375  Q
    ||||||| | |||||||||||| |||  | ||||||||||||| || ||||||||||  |||||||    
T  12566308 acttggatagtgtatacttgcatttatccattccacccttaaaaacgcatagtgtttgtggaaaca 12566243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 258
Target Start/End: Complemental strand, 13094276 - 13094226
Alignment:
Q  208 aaatgatttattttattttcttgcaaacaagttttctgctggaaagctata 258  Q
    |||||||||||||||||||||||||||||| | ||||   |||||||||||    
T  13094276 aaatgatttattttattttcttgcaaacaaatgttctatcggaaagctata 13094226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 30143790 - 30143840
Alignment:
Q  207 caaatgatttattttattttcttgcaaacaagttttctgctggaaagctat 257  Q
    ||||||||||||||| ||||||||||||||| ||| | |||| ||||||||    
T  30143790 caaatgatttattttgttttcttgcaaacaactttaccgctgaaaagctat 30143840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 7636086 - 7636150
Alignment:
Q  282 tgtgggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacc 346  Q
    |||| ||||||||| ||||||| | ||||||||   |||||||||||||||||| || |||||||    
T  7636086 tgtgtgatcgatatttttttatacaataacttgattattgtatacttgcacttagtcattccacc 7636150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 197 - 371
Target Start/End: Original strand, 19589837 - 19590011
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||||  |||||||||||| |||| |  || ||   |||| ||||||| || ||||     
T  19589837 attgttgtgacaaatgatttattctatttttttgcaaacaagttttctattggaaagctataggaagctaaagttctcaagtccatgtgggctcaatatt 19589936  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
     |||||| | |||||||||||| |||||||||||||  | ||||| |||||||||||||||||||||||||||||    
T  19589937 gttttatactataacttggacagtgtatacttgcacccagtcttttcacccttaaatactcatagtgttttggga 19590011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 197 - 346
Target Start/End: Complemental strand, 40504550 - 40504401
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||  |||| | ||||||  ||| | ||||||||||||||||    
T  40504550 attgttgtgacaaatgttttattttattttcttacaaacaagttttctgctgaaaagctatgcgaagctatagctccacagaccatgtgggatcgatatc 40504451  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacc 346  Q
    |||||||   |||||||  |||||||||||||| ||||| ||||| ||||    
T  40504450 tttttatattataacttaaacattgtatacttgtacttagtcttttcacc 40504401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 375
Target Start/End: Original strand, 7229420 - 7229595
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctt 298  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||  ||||| | ||||   || |||||||   || || |||||||||| |||||||    
T  7229420 tgttgtgacaaatgatttattttattttcttggaaacaagttttcta-tggaatgttatagagagctgtagctacccaatccatgtgggatcaatatctt 7229518  T
Q  299 tttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttgggaaaca 375  Q
    ||||| | || ||||||||| |||||||||||||  | ||||| |||| | ||||||||| ||||||||||||||||    
T  7229519 tttatactattacttggacaatgtatacttgcacaaagtcttttcaccttaaaatactcacagtgttttgggaaaca 7229595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 367
Target Start/End: Original strand, 20176373 - 20176541
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctt 298  Q
    |||| ||| ||||||||| ||| |||||||||||||||| ||||||  ||||||| || | |||| | ||||||  |||||  |||| ||||||||||||    
T  20176373 tgttgtgataaatgatttttttaattttcttgcaaacaaattttctagtggaaagatacacgaagctatagctccccagtccctgtgagatcgatatctt 20176472  T
Q  299 tttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgtttt 367  Q
    ||||| | |||||||||||| ||||| |||| ||| | ||||| || | | ||||||||||||||||||    
T  20176473 tttatactataacttggacagtgtatccttgaactcagtcttttcatcttaaaatactcatagtgtttt 20176541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 375
Target Start/End: Original strand, 23104438 - 23104614
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctata-agaagttgtagctcatcagtctatgtgggatcgatatct 297  Q
    |||| |||||||||||| ||||||||||||| |||  || |||||| ||| ||||||||| |||| |  ||||||  || || || |||||| |||||||    
T  23104438 tgttgtgacaaatgattaattttattttcttccaataaatttttcttctgaaaagctatagagaacta-tagctctccaatcaatatgggattgatatct 23104536  T
Q  298 ttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttgggaaaca 375  Q
    |||||| | |||||||||||  |||||||||||| | | ||| |||| | | |||||||||||||||||||| |||||    
T  23104537 ttttatactataacttggacggtgtatacttgcattaagtctctccatcttaaaatactcatagtgttttggaaaaca 23104614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 206 - 334
Target Start/End: Original strand, 9260485 - 9260613
Alignment:
Q  206 acaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgc 305  Q
    |||||||||||||||||||||| | |||| |||||||||  ||  || ||||  |||| | ||||||  || ||  |||||||||||||||||||||| |    
T  9260485 acaaatgatttattttattttcctccaaataagttttctattgagaaactatctgaagctatagctccacaatccctgtgggatcgatatctttttatac 9260584  T
Q  306 cataacttggacattgtatacttgcactt 334  Q
     |||||||||||||| |||||||||||||    
T  9260585 tataacttggacattatatacttgcactt 9260613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 206 - 334
Target Start/End: Complemental strand, 9309809 - 9309681
Alignment:
Q  206 acaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgc 305  Q
    |||||||||||||||||||||| | |||| |||||||||  ||  || ||||  |||| | ||||||  || ||  |||||||||||||||||||||| |    
T  9309809 acaaatgatttattttattttcctccaaataagttttctattgagaaactatctgaagctatagctccacaatccctgtgggatcgatatctttttatac 9309710  T
Q  306 cataacttggacattgtatacttgcactt 334  Q
     |||||||||||||| |||||||||||||    
T  9309709 tataacttggacattatatacttgcactt 9309681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 210 - 346
Target Start/End: Complemental strand, 29541476 - 29541340
Alignment:
Q  210 atgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccata 309  Q
    ||||||||||||||||||||| |||||| ||||||  |||||||||||| | || | || |||   ||||| |||| || |||||||||||||| | |||    
T  29541476 atgatttattttattttcttgtaaacaaattttctattggaaagctatagggagctataactccctagtctctgtgagaccgatatctttttatactata 29541377  T
Q  310 acttggacattgtatacttgcacttaatctttccacc 346  Q
    ||||  ||| |||||||||||||| ||| ||||||||    
T  29541376 acttacacagtgtatacttgcactcaatttttccacc 29541340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 218 - 375
Target Start/End: Complemental strand, 16299642 - 16299486
Alignment:
Q  218 ttttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccataacttggac 317  Q
    |||||||||  | |||||||||||||||||| |||||||   |||| ||||||||  || || |||||||||| ||| |||||||| | |||| |||||     
T  16299642 ttttatttttctccaaacaagttttctgctgaaaagctacgcgaagctgtagctccacaatccatgtgggatcaataactttttatacaataaattggat 16299543  T
Q  318 attgtatacttgcacttaatctttccacccttaaatactcatagtgttttgggaaaca 375  Q
    | | |||||||||||||| | ||| || | | |||||||||||||||||||| |||||    
T  16299542 agtttatacttgcacttagt-tttacatcttaaaatactcatagtgttttggaaaaca 16299486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 371
Target Start/End: Complemental strand, 5048500 - 5048333
Alignment:
Q  206 acaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataa--gaagttgtagctcatcagtctatgtgggatcgatatctttttat 303  Q
    |||| ||||||||||||||||| | |||| |||||||  || | |||||| ||   |||| | ||||||  |||||| |||||||||||||||||||| |    
T  5048500 acaagtgatttattttattttcgtacaaagaagttttaagccgaaaagctgtacacgaagctatagctccacagtctttgtgggatcgatatctttttgt 5048401  T
Q  304 gccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
       |||||||||||| || ||| ||||||| | |||||| ||| | ||||||| ||||||||||||||    
T  5048400 agtataacttggacaatgcataattgcactcagtctttctaccttaaaatacttatagtgttttggga 5048333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 984841 - 984966
Alignment:
Q  4 tcacctgcttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagct 103  Q
    |||| ||||||||||||||| || | |||||  ||||||| ||| |||||||||||| ||||||||| |||||| || || |  ||||| |||||||| |    
T  984841 tcacttgcttaacatgaaggttgagcgaaacatctcctagaggctaccaggttgccaagaagccatagaaagctataactttgtagatcctagcaaagat 984940  T
Q  104 ctgtcatagttgattctttgtttaaa 129  Q
    || ||||| || |||| |||||||||    
T  984941 ctatcataattaattcattgtttaaa 984966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 19589538 - 19589620
Alignment:
Q  4 tcacctgcttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaagctgtagctata 86  Q
    |||| ||||||||||||||| || ||||||| ||||||||||||||| |  |||  |||||||||||||||| | ||||||||    
T  19589538 tcacgtgcttaacatgaaggttgagtgaaacacctcctagtggccactaaattgttaggaagccataaaaagttatagctata 19589620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 29541628 - 29541554
Alignment:
Q  58 ccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtcatagttgattctttgtttaaacca 132  Q
    ||||||||||| | |||||| ||||| || ||||||||| |||||||| ||||| |||| |||||||||||||||    
T  29541628 ccaggaagccagagaaagctatagctctatagatcgtagtaaagctctctcataattgaatctttgtttaaacca 29541554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 2475861 - 2475788
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagc 270  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||| ||  |||| |||| ||| |||||||    
T  2475861 attgttgtgacaaatgatttattttatttttttacaaacaagttttctacttaaaagttataggaaattgtagc 2475788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 24422507 - 24422556
Alignment:
Q  284 tgggatcgatatctttttatgccataacttggacattgtatacttgcact 333  Q
    |||||| ||||||||||||| |||||||||  ||||||||||||||||||    
T  24422507 tgggatggatatctttttataccataacttaaacattgtatacttgcact 24422556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 2476049 - 2475951
Alignment:
Q  9 tgcttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgt 107  Q
    ||||||||||||||| || ||||||  | | |||||| ||||||||||| ||||||  |||| |||  | ||||| |  ||||||||||||||||||||    
T  2476049 tgcttaacatgaaggctgagtgaaatacattctagtgaccaccaggttgtcaggaaaacatagaaaaatatagctctgtagatcgtagcaaagctctgt 2475951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 45957561 - 45957615
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctata 258  Q
    |||||||||| |  ||||||||||||||||||||||||||| | || ||||||||    
T  45957561 tgacaaatgaatcgttttattttcttgcaaacaagttttctacggggaagctata 45957615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 16259184 - 16259229
Alignment:
Q  296 ctttttatgccataacttggacattgtatacttgcacttaatcttt 341  Q
    |||||||| | |||||||||||| |||||||||||||||| |||||    
T  16259184 ctttttatactataacttggacagtgtatacttgcacttagtcttt 16259229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 24422462 - 24422490
Alignment:
Q  216 tattttattttcttgcaaacaagttttct 244  Q
    |||||||||||||||||||||||||||||    
T  24422462 tattttattttcttgcaaacaagttttct 24422490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 279
Target Start/End: Complemental strand, 26572044 - 26571972
Alignment:
Q  207 caaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtc 279  Q
    |||||||||||||||||||||  | ||||||||| ||| || |||  |||||||||| | |||||| ||||||    
T  26572044 caaatgatttattttattttcaaggaaacaagttctctccttgaatactataagaagctatagctcctcagtc 26571972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 197 - 375
Target Start/End: Original strand, 16511885 - 16512063
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  | | ||||||||||||  || | |||||| ||||||| ||| | ||| ||||     
T  16511885 attgttgtgacaaatgatttattttattttcttgcaaacaagtttattaccggaaagctataaagagctatagctcttcagtctctgttgaatcaatatt 16511984  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttgggaaaca 375  Q
    | ||||| | |||| |||||||||||||||||||||| | ||||| |||| | |||||||| ||| |||||| ||||||    
T  16511985 tgtttatcctataatttggacattgtatacttgcactaagtcttttcaccttaaaatactcgtagggttttgagaaaca 16512063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 367
Target Start/End: Complemental strand, 13808178 - 13808003
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtc--ta-----tgtgggatcg 291  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||| |||| |||||| || |||  |||||  ||     |||||||||     
T  13808178 tgttgtgacaaatgatttattttattttgttgcaaacaagttttctactgaaaagttatacgaagttatatctccacagtccttagtccttgtgggatca 13808079  T
Q  292 atatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgtttt 367  Q
    ||||||||||||   ||||| |||||| |||||||||||||| | |||||||| | | ||||||||||| ||||||    
T  13808078 atatctttttatattataacctggacaatgtatacttgcactaagtctttccatcttaaaatactcataatgtttt 13808003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 367
Target Start/End: Complemental strand, 24884329 - 24884159
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| |||||||| ||||||||||||||  | |||| ||||||||| ||  ||||||||   ||| | ||||||  |||||  ||||||||||| ||     
T  24884329 attgttgtgacaaattatttattttatttttctccaaataagttttctactaaaaagctatctcaagctatagctccacagtccctgtgggatcgaaatt 24884230  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgtttt 367  Q
    |||||||   ||||||||| |  |||||||||||||||| |||||| | | | ||||||| ||||||||||    
T  24884229 tttttattatataacttgggcggtgtatacttgcacttagtctttcaatcttaaaatacttatagtgtttt 24884159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 17469482 - 17469535
Alignment:
Q  11 cttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaa 64  Q
    ||||||||||||| || ||||||| |||||||||| ||||||||||| ||||||    
T  17469482 cttaacatgaaggttgagtgaaactcctcctagtgaccaccaggttgtcaggaa 17469535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 303
Target Start/End: Complemental strand, 43581871 - 43581786
Alignment:
Q  218 ttttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttat 303  Q
    ||||||||||||||||||||||||||| |||||||| ||||   || | || |||  |||||| |||| |||| ||||||||||||    
T  43581871 ttttattttcttgcaaacaagttttctactggaaagttatatagagctataactccccagtctctgtgtgatcaatatctttttat 43581786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 241
Target Start/End: Complemental strand, 12121656 - 12121625
Alignment:
Q  210 atgatttattttattttcttgcaaacaagttt 241  Q
    ||||||||||||||||||||||||||||||||    
T  12121656 atgatttattttattttcttgcaaacaagttt 12121625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 43587492 - 43587566
Alignment:
Q  37 ctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtcata 111  Q
    |||| ||||||||||||||||||| ||||||||| ||||  |||||| || ||||||  | |||||| |||||||    
T  43587492 ctcccagtggccaccaggttgccatgaagccatagaaagtcgtagctctatagatcgctgtaaagctttgtcata 43587566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 206 - 371
Target Start/End: Complemental strand, 12109289 - 12109123
Alignment:
Q  206 acaaatgatttattttattttcttgcaaacaagttttctgctggaaagcta-taagaagttgtagctcatcagtctatgtgggatcgatatctttttatg 304  Q
    |||||||| |||||||||||||||  |||||||||||||  | |||||||| || |||||| ||  || ||| |    |||||||||||||||||||||     
T  12109289 acaaatgaattattttattttcttttaaacaagttttctatttgaaagctaataggaagttatacttcctcaattcccgtgggatcgatatctttttata 12109190  T
Q  305 ccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
      |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  12109189 ttataacttggacaatgtatacttgcacttaatctttccacccttgaatactaatagtgttttggga 12109123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 368
Target Start/End: Complemental strand, 41953619 - 41953450
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctt 298  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||  || | ||||||  |||||  |||| ||| |||||  |    
T  41953619 tgttgtgacaaatgatttattttattttcttgcaaataagttttctactgaaaagctataaagagctatagctccccagtccctgtgagattgatattat 41953520  T
Q  299 tttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttg 368  Q
    ||||  | |||||||||||| |||||||||||||  | |||||||| | | ||||||||||||| |||||    
T  41953519 tttaaactataacttggacaatgtatacttgcaccaagtctttccatcttaaaatactcatagtattttg 41953450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 199 - 375
Target Start/End: Original strand, 7703286 - 7703461
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctt 298  Q
    |||| |||||||||| ||||||||||||| | |||||||| ||||| ||| ||||||| | |||| | ||||||  || || |||||  ||| |||| ||    
T  7703286 tgttgtgacaaatgacttattttattttcgtacaaacaagctttctcctgaaaagctacacgaagctatagctccacattccatgtgaaatcaatat-tt 7703384  T
Q  299 tttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttgggaaaca 375  Q
    ||||| | |||||||||||| |||||||||||||| | ||| |||||| | ||||||| ||||||||||||||||||    
T  7703385 tttatactataacttggacagtgtatacttgcactgagtctgtccaccttaaaatacttatagtgttttgggaaaca 7703461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 204 - 371
Target Start/End: Complemental strand, 19940265 - 19940101
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttat 303  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||| ||| ||||| |||| | ||||||  |||||  |||| |||  ||||||||||||    
T  19940265 tgacaaatgatttattttatttt-ttgtaaacaagttttctactgaaaaactataggaagctatagctccacagtccttgtgagattaatatctttttat 19940167  T
Q  304 gccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
     | ||||||| |||| | |||||||||||| |||||||||||| | ||||||||  ||||||||||||    
T  19940166 actataacttagacaatatatacttgcactcaatctttccaccttaaaatactc--agtgttttggga 19940101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 205 - 334
Target Start/End: Original strand, 8913210 - 8913339
Alignment:
Q  205 gacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatg 304  Q
    |||||||| ||||||||||| |    || ||||||||||||||| ||||||||   ||||| |||| |  |||||  ||||||||||||||||||||||     
T  8913210 gacaaatgttttattttattcttcaccacacaagttttctgctgaaaagctatttcaagttatagcgccacagtccctgtgggatcgatatctttttata 8913309  T
Q  305 ccataacttggacattgtatacttgcactt 334  Q
    |||||||||||||| |||||||||||||||    
T  8913310 ccataacttggacagtgtatacttgcactt 8913339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 204 - 371
Target Start/End: Original strand, 23154404 - 23154572
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgata-tcttttta 302  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||  | ||| ||||||  || ||  ||||| ||| ||| | ||||||    
T  23154404 tgacgaatgatttattttattttcttgcaaacaatttttctgctggaaagctatagaatgttatagctccccaatccctgtggaatcaatatttttttta 23154503  T
Q  303 tgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    |   |||| ||||||| ||||||||| |||||| | | | ||||||  |||||||||||| || |||||    
T  23154504 tagtataatttggacaatgtatacttacacttagtatgttcaccctctaatactcatagtattatggga 23154572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 20572296 - 20572350
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctata 258  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  20572296 tgacaaatgatttattttattttcttgcaaacaagttttctactggaaagatata 20572350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 12109486 - 12109363
Alignment:
Q  9 tgcttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtc 108  Q
    |||||||||| ||| ||| ||||||| |||||||||||  | |||||| ||||||| ||||| |||| | ||||| |  |||||| ||||||||| ||||    
T  12109486 tgcttaacattaagaatgagtgaaacacctcctagtggttatcaggtttccaggaatccatagaaagttatagctttgtagatcgcagcaaagctatgtc 12109387  T
Q  109 atagttgattctttgtttaaacca 132  Q
    ||   |||||||||||||||||||    
T  12109386 attactgattctttgtttaaacca 12109363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 19940432 - 19940337
Alignment:
Q  37 ctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtcatagttgattctttgtttaaacca 132  Q
    |||||||||||||  |||||||||| ||| |||||||| || ||||| |  ||||||||| ||| ||||||||||  ||| |||||||||||||||    
T  19940432 ctcctagtggccattaggttgccagaaagtcataaaaaactatagctctgtagatcgtagtaaaactctgtcataactgaatctttgtttaaacca 19940337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 23154212 - 23154331
Alignment:
Q  11 cttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtcat 110  Q
    |||||||||| || || |||| ||  ||||||| ||||| || ||||| |||||| |||| |||| | ||||  || | ||||||||| |||||||||||    
T  23154212 cttaacatgatggttgagtgagacatctcctagaggccatcaagttgctaggaagtcatataaagttatagccctataaatcgtagcacagctctgtcat 23154311  T
Q  111 agttgattctttgtttaaac 130  Q
    | ||||||||||||||||||    
T  23154312 aattgattctttgtttaaac 23154331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 50980218 - 50980257
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttc 243  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50980218 tgacaaatgatttattttattttcttgcaaacaagttttc 50980257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 10180139 - 10180219
Alignment:
Q  291 gatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    ||||||||||||| | |||| ||||| | |||||||||| ||||| |||||||||  | |||||||| |||||||||||||    
T  10180139 gatatctttttatactataatttggatagtgtatacttgaacttagtctttccactttaaaatactcgtagtgttttggga 10180219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 51462367 - 51462415
Alignment:
Q  210 atgatttattttattttcttgcaaacaagttttctgctggaaagctata 258  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||    
T  51462367 atgatttattttatttttttgcaaacaagttttatgttggaaagctata 51462415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 4225910 - 4225972
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataa 259  Q
    |||||||  |||||||||||||||||||||||| |||||||||||| | ||| ||| ||||||    
T  4225910 attgttaaaacaaatgatttattttattttcttacaaacaagttttatactgaaaaactataa 4225972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 370
Target Start/End: Complemental strand, 11488536 - 11488366
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| | ||||||| |||||||||||||  | |||||||||||| ||||  |||| ||   |||| | ||||||   ||||  ||||||||||||||     
T  11488536 attgttgtaacaaatgttttattttatttttctacaaacaagttttttgctaaaaaggtacgcgaagctatagctccatagtccttgtgggatcgatata 11488437  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggg 370  Q
    ||||||| | ||||||| || | ||||||||||  || |||||||||||| | |||||||  ||||||||||||    
T  11488436 tttttatac-ataacttcgatagtgtatacttgacctcaatctttccaccttaaaatact--tagtgttttggg 11488366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 7354104 - 7354055
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttctgctggaaag 253  Q
    ||||||||||||||||||||||| |||||| |||||||||| || |||||    
T  7354104 tgacaaatgatttattttatttttttgcaatcaagttttctactagaaag 7354055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 9274526 - 9274592
Alignment:
Q  276 agtctatgtgggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttc 342  Q
    ||||||| |||||||||||||||||||| |   || ||||| | |||||||||||||||| ||||||    
T  9274526 agtctatatgggatcgatatctttttatacttgaatttggatagtgtatacttgcacttagtctttc 9274592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 318
Target Start/End: Original strand, 21799121 - 21799235
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttat 303  Q
    ||||||||||||||||||||||||| | | ||||| ||||| |  || ||||||| |||| | || ||| ||| ||  | || |||||||||||||||||    
T  21799121 tgacaaatgatttattttattttctcgtacacaagctttctacaagagagctatatgaagctataactcctcaatccttttgagatcgatatctttttat 21799220  T
Q  304 gccataacttggaca 318  Q
     | ||||||| ||||    
T  21799221 actataacttagaca 21799235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 286 - 371
Target Start/End: Original strand, 3285484 - 3285569
Alignment:
Q  286 ggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    |||||||||||||||||| | |||||||||| | |||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  3285484 ggatcgatatctttttatactataacttggaaagtgtatacttgcacttagtctttccaccttaaaatactcatagtgttttggga 3285569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 214 - 370
Target Start/End: Original strand, 863653 - 863808
Alignment:
Q  214 tttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccataactt 313  Q
    |||||||||||||||||||||||| || | || |  ||||||||| |||||| ||||||   |  || ||||||||| |||||||||||  | |||||||    
T  863653 tttattttattttcttgcaaacaatttgtatgttaaaaagctataggaagttatagctccctatcct-tgtgggatcaatatctttttaaactataactt 863751  T
Q  314 ggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggg 370  Q
    ||||| ||||||||||||||||||||||||| | | |||| ||||||| ||||||||    
T  863752 ggacaatgtatacttgcacttaatctttccatcttcaaattctcatagcgttttggg 863808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 371
Target Start/End: Original strand, 3257957 - 3258047
Alignment:
Q  281 atgtgggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    |||| ||||||||| ||||||||   |||||||| | |||||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  3257957 atgttggatcgatacctttttatattataacttgaaaattgtatacttgcacttagtctttccaccttaaaatactcatagtgttttggga 3258047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 863086 - 863190
Alignment:
Q  28 gtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaagctgtagctatacagatcgtagcaaagctctgtcatagttgattctttgttta 127  Q
    |||||||  ||||||| ||||||||||||| || |||||||| ||||||| || || |  | |||||||||||||| ||||||| |||||||||||||||    
T  863086 gtgaaacatctcctagaggccaccaggttgtcaagaagccatgaaaagctataactttgtatatcgtagcaaagctttgtcataattgattctttgttta 863185  T
Q  128 aacca 132  Q
    |||||    
T  863186 aacca 863190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 32201957 - 32201852
Alignment:
Q  266 gtagctcatcagtctatgtgggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgtt 365  Q
    |||||||  ||||| ||||||||||||||| ||||| | | |||||||||||| ||||||||||||||||  ||||| | | | |||||||  |||||||    
T  32201957 gtagctccacagtccatgtgggatcgatatttttttgtactataacttggacagtgtatacttgcacttagactttcaatcataaaatacttctagtgtt 32201858  T
Q  366 ttggga 371  Q
    ||||||    
T  32201857 ttggga 32201852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 371
Target Start/End: Complemental strand, 16217358 - 16217201
Alignment:
Q  214 tttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccataactt 313  Q
    |||||||||||||| | |||| |||||||  | || ||||||||  |||| | ||||||  ||||| ||||||||| ||||||| ||||| | |||||||    
T  16217358 tttattttattttcctacaaataagtttttcgttgaaaagctatttgaagatatagctccacagtccatgtgggattgatatctgtttatactataactt 16217259  T
Q  314 ggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    |||   ||||||||||| |||||| |||| | | | |||||||  |||| ||||||||    
T  16217258 ggatgatgtatacttgcgcttaatttttcaatcttaaaatacttctagtattttggga 16217201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 371
Target Start/End: Original strand, 3404637 - 3404722
Alignment:
Q  286 ggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    |||| ||||| ||||||  | |||||| ||||| |||||||||| ||| | |||||||||| | ||||||||||||||||| ||||    
T  3404637 ggatagatatttttttagactataactaggacaatgtatacttggactcagtctttccaccttaaaatactcatagtgtttcggga 3404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 27902923 - 27902972
Alignment:
Q  204 tgacaaatgatttattttattttcttgcaaacaagttttctgctggaaag 253  Q
    |||||||||| |||||||||||||||||||||||||| | ||||| ||||    
T  27902923 tgacaaatgacttattttattttcttgcaaacaagttatttgctgaaaag 27902972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 3256747 - 3256795
Alignment:
Q  286 ggatcgatatctttttatgccataacttggacattgtatacttgcactt 334  Q
    |||||||||||||||||| | |||||||||||  |||||||||||||||    
T  3256747 ggatcgatatctttttatactataacttggacgatgtatacttgcactt 3256795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 370
Target Start/End: Original strand, 4776621 - 4776789
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctt 298  Q
    |||| |||||||||||| |||||||||   || ||||| ||||||| ||| | ||||| | |||| | ||||||  || ||  |||||| || |||||||    
T  4776621 tgttgtgacaaatgattcattttattta--tgtaaacatgttttctactgaacagctacacgaagctttagctccacaatccttgtggg-tcaatatctt 4776717  T
Q  299 tttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggg 370  Q
    ||||| | |||||||| |  ||||||||||| | | | ||||||| || | |||||||||||||||||||||    
T  4776718 tttatactataacttgaatgttgtatacttgaattcagtctttcccccttaaaatactcatagtgttttggg 4776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 3388956 - 3389020
Alignment:
Q  307 ataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    |||||| ||||| |||||||||| | | | |||||||||| | ||||||||||||||||| ||||    
T  3388956 ataactaggacaatgtatacttggattcagtctttccaccttaaaatactcatagtgtttcggga 3389020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 366
Target Start/End: Original strand, 3404377 - 3404457
Alignment:
Q  286 ggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttt 366  Q
    ||||| |||| ||||||| | ||||||   ||| |||||||||||||| | ||||||||||   |||||||||||||||||    
T  3404377 ggatcaatatatttttatactataactataacaatgtatacttgcactcagtctttccacctaaaaatactcatagtgttt 3404457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 199 - 371
Target Start/End: Complemental strand, 25894257 - 25894086
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctt 298  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||   || | ||||||  || || |||||||||| |||||||    
T  25894257 tgttgtgacaaatgatttattttattttcttacaaacaagttttctgctagaaagctatagagagctatagctc-ccaatccatgtgggatcaatatctt 25894159  T
Q  299 tttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    ||||| | |||| ||||  | | |||||||||||| |  |||| || | | ||||||||| | ||||||||||    
T  25894158 tttatactataaattggcaaatttatacttgcactaacccttttcatcttaaaatactcacaatgttttggga 25894086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 375
Target Start/End: Original strand, 30972983 - 30973161
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| ||| ||||| | |||||||||||  | |||||| ||||||||| | |||||||    |||   ||||||  |||||| | |||||||||||||    
T  30972983 attgttgtgaaaaatgttatattttatttttctccaaacatgttttctgcagaaaagctacgcaaagccatagctccacagtctctatgggatcgatatc 30973082  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttgggaaaca 375  Q
    ||||||| | |||||||   || ||||||||||||||||  ||||||||| | ||||||||||||| ||||||||||||    
T  30973083 tttttatactataacttttgcagtgtatacttgcacttagcctttccaccttaaaatactcatagtattttgggaaaca 30973161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 197 - 341
Target Start/End: Original strand, 24576766 - 24576910
Alignment:
Q  197 attgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatc 296  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||| ||  |||| ||||  ||| | ||||||   ||||  | ||||||| |||||    
T  24576766 attgttgtgacaaataatttattttactttcttgcaaacaagttttctactcaaaagttatacaaagctatagctccatagtccctatgggatcaatatc 24576865  T
Q  297 tttttatgccataacttggacattgtatacttgcacttaatcttt 341  Q
    |||||||   |||| ||||| | ||||||||||||||||||||||    
T  24576866 tttttatattataatttggatagtgtatacttgcacttaatcttt 24576910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 371
Target Start/End: Complemental strand, 33855174 - 33854997
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagtttt-ctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatct 297  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||||  || | || |||    |||  | || |||| ||||||    
T  33855174 tgttgtgacaaatgattttttttattttcttgcaaacaagtttttctgcaggaaagttataaagagctataactccctggtcactatgagatcaatatct 33855075  T
Q  298 tt----ttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    ||    |||| | ||||||| |||| |||||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  33855074 ttctttttatactataacttagacagtgtatacttgcactaagtctttccatcttaaaatactcatagtgttttggga 33854997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 367
Target Start/End: Original strand, 5370927 - 5371010
Alignment:
Q  284 tgggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgtttt 367  Q
    |||||| ||||||||||||| | |||||||| |||||||||||||||||| | |||||||||  | ||||| ||||||||||||    
T  5370927 tgggattgatatctttttatactataacttgaacattgtatacttgcactcagtctttccactttaaaatagtcatagtgtttt 5371010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 277 - 367
Target Start/End: Original strand, 17270528 - 17270618
Alignment:
Q  277 gtctatgtgggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgtttt 367  Q
    |||| |||| |||| |||||||||||| | |||||||  |||||||||||||||||| ||| |||| ||| | ||||||||||||||||||    
T  17270528 gtctctgtgagatcaatatctttttatactataacttaaacattgtatacttgcactcaatatttctaccttaaaatactcatagtgtttt 17270618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 362
Target Start/End: Complemental strand, 27466634 - 27466487
Alignment:
Q  214 tttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccataactt 313  Q
    |||||||||||||||| |||||||||||||||| | ||||||| | ||||  |||||||   | || |||||  ||| || |||||||||   |||||||    
T  27466634 tttattttattttcttacaaacaagttttctgc-gaaaagctaaaggaagccgtagctcccgaatccatgtgaaatcaatgtctttttatattataactt 27466536  T
Q  314 ggacattgtatacttgcacttaatctttccacccttaaatactcatagt 362  Q
    ||| | |||||| ||||||||| ||||||||||||| |||  |||||||    
T  27466535 ggagagtgtataattgcacttagtctttccacccttgaatgttcatagt 27466487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 332
Target Start/End: Complemental strand, 9789687 - 9789569
Alignment:
Q  214 tttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccataactt 313  Q
    |||||||||||||||||||||||||||| ||||||||||| |||| |||| | |||||     ||   | ||||||| ||||| |||||| | |||||||    
T  9789687 tttattttattttcttgcaaacaagtttactgctggaaagttataggaagctatagcttccatgttcctatgggatcaatatcattttatactataactt 9789588  T
Q  314 ggacattgtatacttgcac 332  Q
    ||| | |||||||||||||    
T  9789587 ggataatgtatacttgcac 9789569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 13231973 - 13231922
Alignment:
Q  320 tgtatacttgcacttaatctttccacccttaaatactcatagtgttttggga 371  Q
    |||||||||||||||| |||||||||| | |||||||||||||||| |||||    
T  13231973 tgtatacttgcacttactctttccaccttaaaatactcatagtgttatggga 13231922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 282 - 369
Target Start/End: Original strand, 34063496 - 34063583
Alignment:
Q  282 tgtgggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactcatagtgttttgg 369  Q
    ||||| ||||||| | |||||| | |||||||||||| |||||||||||| | | |||||||||  | ||| ||||||||||||||||    
T  34063496 tgtggaatcgatagccttttatactataacttggacaatgtatacttgcattcagtctttccacattaaaacactcatagtgttttgg 34063583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 27466813 - 27466751
Alignment:
Q  12 ttaacatgaaggatgggtgaaacgcctcctagtggccaccaggttgccaggaagccataaaaa 74  Q
    |||||||||||| || ||||||| |||||||||| |||||||||| ||||||| |||| ||||    
T  27466813 ttaacatgaaggctgagtgaaacacctcctagtgaccaccaggtttccaggaaaccattaaaa 27466751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 17557736 - 17557685
Alignment:
Q  284 tgggatcgatatctttttatgccataacttggacattgtatacttgcactta 335  Q
    ||||||| |||||||||||| | | |||||| ||||||||||||||||||||    
T  17557736 tgggatcaatatctttttatacaagaacttgaacattgtatacttgcactta 17557685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 16341556 - 16341437
Alignment:
Q  199 tgttatgacaaatgatttattttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcag-tctatgtgggatcgatatct 297  Q
    |||| ||| ||||| || ||| |||||| ||||||||| ||||||||| | ||||||| | |||| | ||||||  ||| ||| |||||||| |||||||    
T  16341556 tgttgtgagaaatgtttaattatattttattgcaaacacgttttctgcagaaaagctacacgaagctatagctccacagctct-tgtgggatagatatct 16341458  T
Q  298 ttttatgccataacttggaca 318  Q
    ||||||   ||||||||||||    
T  16341457 ttttatattataacttggaca 16341437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 334
Target Start/End: Complemental strand, 7117877 - 7117771
Alignment:
Q  226 tcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccataacttggacattgtata 325  Q
    ||||||||||||||||  ||||||||||||||| |||| | |||| |  | ||||||||||| |||  |||||||||| | || ||||||||| ||||||    
T  7117877 tcttgcaaacaagtttattgctggaaagctataggaagctatagcaccccggtctatgtgggttcg--atctttttattctattacttggacaatgtata 7117780  T
Q  326 cttgcactt 334  Q
    |||||||||    
T  7117779 cttgcactt 7117771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 21671076 - 21671025
Alignment:
Q  205 gacaaatgatttattttattttcttgcaaacaagttttctgctggaaagcta 256  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| |||||||    
T  21671076 gacaaatgatttattttattttcttacaaacaagttttatgctgaaaagcta 21671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 21678492 - 21678441
Alignment:
Q  205 gacaaatgatttattttattttcttgcaaacaagttttctgctggaaagcta 256  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| |||||||    
T  21678492 gacaaatgatttattttattttcttacaaacaagttttatgctgaaaagcta 21678441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 334
Target Start/End: Complemental strand, 7130262 - 7130155
Alignment:
Q  225 ttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttatgccataacttggacattgtat 324  Q
    |||||||||||||||||  ||||||||||||||| |||| | |||| |  | |||| |||||| |||  |||||||||| | || ||||||||| |||||    
T  7130262 ttcttgcaaacaagtttattgctggaaagctataggaagctatagcaccccggtctctgtgggttcg--atctttttattctattacttggacaatgtat 7130165  T
Q  325 acttgcactt 334  Q
    ||||||||||    
T  7130164 acttgcactt 7130155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 5988225 - 5988150
Alignment:
Q  282 tgtgggatcgatatctttttatgccataacttggacattgtatacttgcacttaatctttccacccttaaatactc 357  Q
    ||||||||| |||||||||||| | |||||||| ||  |||||||||||||| | || ||||| ||||| ||||||    
T  5988225 tgtgggatcaatatctttttatactataacttgaaccctgtatacttgcactcagtcattccatccttagatactc 5988150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 7118012 - 7118056
Alignment:
Q  90 atcgtagcaaagctctgtcatagttgattctttgtttaaaccatg 134  Q
    ||||||||||||||||  |||| ||||||| ||||||||||||||    
T  7118012 atcgtagcaaagctctaccataattgattcattgtttaaaccatg 7118056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 7130396 - 7130440
Alignment:
Q  90 atcgtagcaaagctctgtcatagttgattctttgtttaaaccatg 134  Q
    ||||||||||||||||  |||| ||||||| ||||||||||||||    
T  7130396 atcgtagcaaagctctaccataattgattcattgtttaaaccatg 7130440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 108198 - 108283
Alignment:
Q  218 ttttattttcttgcaaacaagttttctgctggaaagctataagaagttgtagctcatcagtctatgtgggatcgatatctttttat 303  Q
    ||||||||||||||||||||||||||| ||  |||||||||   || | |||| |   |||| |||||||||||||||||||||||    
T  108198 ttttattttcttgcaaacaagttttctactaaaaagctatagagagctatagccccctagtccatgtgggatcgatatctttttat 108283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 120404 - 120453
Alignment:
Q  209 aatgatttattttattttcttgcaaacaagttttctgctggaaagctata 258  Q
    |||||||||||||||||||||||||||||||||   |||| |||||||||    
T  120404 aatgatttattttattttcttgcaaacaagtttatcgctgaaaagctata 120453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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