View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0256_low_30 (Length: 251)
Name: NF0256_low_30
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_30 |
 | |
|
| [»] scaffold0340 (1 HSPs) |
| | |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 15565362 - 15565171
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15565362 |
aagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
15565263 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
15565262 |
aattaccaagatgtcaaagtatatggctttgctattgctaattttaaccacaccaaaaatttacacgtcctttatattgtgaccggtgcaca |
15565171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 44308455 - 44308642
Alignment:
| Q |
16 |
aagtcagcatagtaaagtaccacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaat |
115 |
Q |
| |
|
|||||| ||||||||||||| || | || |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44308455 |
aagtcaacatagtaaagtacaac-cacgttagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaagaat |
44308553 |
T |
|
| Q |
116 |
taccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
44308554 |
taccaagatgtcaaagtatatggctttgctattgctaattttaaccacaccaaaaatttccatttcatttatattgtgagcggtgcaca |
44308642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 20832061 - 20832250
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
20832061 |
aagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatgcatgattgacataaccaaa |
20832160 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
20832161 |
aattaccaagatgtcaaagtatatggctttgctattgctaattttaac--caccaaaaatttccacttcctttatactgtgaccggtgcaca |
20832250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 26167 - 26353
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26167 |
aagtcagcatagtaaagtacaaccacgcttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
26266 |
T |
|
| Q |
113 |
aattaccaa----------gatgtcaaagtatatggctttgctattg-ataattttaaccacaccaaaaatttccacttcctttata |
188 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
26267 |
aattaccaagatgtcaaaggatgtcaaagtatatggctttgctattgcttaattttaaccacaccaaaaatcttcacttcctttata |
26353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 25630523 - 25630696
Alignment:
| Q |
16 |
aagtcagcatagtaaagta---ccacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||| |||||| |||||| | ||||||||||||||||| |||| |||||||||||||| |||||||| | | ||||||||||||| |||| |
|
|
| T |
25630523 |
aagtcagcatagcaaagtagagccacacctttcagatggaaaactaatgcatgacatacataatgaagcacataaatgacatatgattggcataaacaag |
25630622 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25630623 |
----------atgtcaaaatatatggctttgttattgctaattttaaccacaccataaatttccacttcctttatattgtgagc |
25630696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 12502456 - 12502608
Alignment:
| Q |
34 |
accacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagta |
133 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||||||| ||| |||||||| | | ||||||| |||||||||||| |||||| || |
|
|
| T |
12502456 |
accacacatgtcagatggaaaactaatgcataacatacataataaagcacataaatgacatatgattgacataaccaagaa----------gtcaaaata |
12502545 |
T |
|
| Q |
134 |
tatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12502546 |
tatcgctttgctattgctcattttaaccacaccaaaaatttccacttcctttatattgtgagc |
12502608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 26831878 - 26832069
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26831878 |
aagtcaacatagtaaagtacagccacacttgtcagatgaaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
26831977 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26831978 |
aattaccaagatgtcacagtatatggctttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
26832069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 14103656 - 14103465
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
14103656 |
aagtcagcatagtaaagtacaatcatacttgtcagatgaaaaactaatacatgtcatacataatgaaacacataaataatacatgattgacataaccaag |
14103557 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14103556 |
aattaccaagatatcaaaatatatggctttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
14103465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 14413673 - 14413482
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
14413673 |
aagtcagcatagtaaagtacaatcatacttgtcagatgaaaaactaatacatgtcatacataatgaaacacataaataatacatgattgacataaccaag |
14413574 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14413573 |
aattaccaagatatcaaaatatatggctttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
14413482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 36897741 - 36897930
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
36897741 |
aagtcagcatagtaaagtacaaccacacttg--agatgaaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcatagtcaag |
36897838 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36897839 |
aattaccaagatgtcaaagtatatgactttgctattgcaaattttaaccacaccaaaaattttcacttcctttatattgtgagcggtgcaca |
36897930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 15752569 - 15752748
Alignment:
| Q |
16 |
aagtcagcatagtaaagtaccacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaat |
115 |
Q |
| |
|
|||||||||||| |||| || || || |||| || ||||| |||| ||| |||||||||||||| |||||||| | | ||||||||||||||||||||| |
|
|
| T |
15752569 |
aagtcagcatagcaaagaacaaccct-gtcaaatagaaaagtaatgcatatcatacataatgaagcacataaatgacatatgattggcataaccaagaat |
15752667 |
T |
|
| Q |
116 |
taccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
|||| ||||||| || |||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15752668 |
taccgagatgtcgaaatatatggctttgttattgctaatcttaaccacaccaaaaatttccacttcctttatattgtgagc |
15752748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 26928425 - 26928510
Alignment:
| Q |
19 |
tcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattg |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
26928425 |
tcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattg |
26928510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 42261120 - 42261242
Alignment:
| Q |
34 |
accacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagta |
133 |
Q |
| |
|
||||||| |||||||| ||||| |||| |||| |||||||||| ||| |||||||| | | ||| |||| |||||||| ||||| |||||||||||| || |
|
|
| T |
42261120 |
accacacatgtcagatagaaaaataatgcatgacatacataataaagcacataaatgacatatgtttggtataaccaaaaattatcaagatgtcaaaata |
42261219 |
T |
|
| Q |
134 |
tatggctttgctattgataattt |
156 |
Q |
| |
|
||||| |||||||||| |||||| |
|
|
| T |
42261220 |
tatggttttgctattgctaattt |
42261242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 46295263 - 46295072
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46295263 |
aagtcagcatagtaaagtacaaccacatttgtcagatgaaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
46295164 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46295163 |
aattatcaagatgtcaaagtatatggctttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
46295072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 21247285 - 21247094
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21247285 |
aagtcagcatagtaaagtacagccatacttgtcagatggaaaactaatacatgtgatacataatgaagcacataaataatatatgattggcataaccaag |
21247186 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21247185 |
aataaccaagatgtcaaaatatatggctttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
21247094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 44431533 - 44431724
Alignment:
| Q |
16 |
aagtcagcatagtaaagtaccac---acttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||| ||||||||||||| || |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44431533 |
aagtcaacatagtaaagtacaaccgcacttgttagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
44431632 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
44431633 |
aattaccaagatgtcaaagtatatggctttgctattgctaattttaaccacaccaaaaaatttcacttcctttatattgtgagcggtgcaca |
44431724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 16835203 - 16835012
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| |||| ||||| |
|
|
| T |
16835203 |
aagtcagcataataaagtacaaccacatttgtcagatggaaaactaatacatgtcttacataatgaagcacataaataatacatgattgacatacccaag |
16835104 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16835103 |
aattaccaagatgtcaaagtatatggctttgctattgctaattttaaccacaccaaaaatttctacttcctttatattgtgagcggtgcaca |
16835012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 39365187 - 39365362
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||| |
|
|
| T |
39365187 |
aagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattgacataattaag |
39365286 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttata |
188 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39365287 |
aattaccaagatgtcatagtatatggctttgctattactaattttaaccacaccaaaaatttccacttcctttata |
39365362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 1799540 - 1799355
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
1799540 |
aagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatatatgattggcataatcaag |
1799441 |
T |
|
| Q |
113 |
aattaccaagatgtc----------aaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttata |
188 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1799440 |
aattaccaagatgtcaaaggatgtcaaagtatatggctttcctattgctaattttaaccacaccaaaaatttccacttcctttata |
1799355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 42775062 - 42775206
Alignment:
| Q |
13 |
atgaagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataacc |
109 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||| |||||||||| ||| ||| |||| | | ||||||||||||||| |
|
|
| T |
42775062 |
atgaagtcagcatagcaaagtacagccacacctgtcagatggaaaactaatgcatgacatacataataaagcacagaaatgacatatgattggcataacc |
42775161 |
T |
|
| Q |
110 |
aagaattaccaagatgtcaaagtatatggctttgctattgataat |
154 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
42775162 |
aagaattaccaagatgtcaaaatatatggctttgctattggtaat |
42775206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 25377078 - 25377260
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||| ||||| ||||||| ||||| |||| ||| |||||||||| |||| |||||||| ||||| |||||||| | | | ||| ||||||||||| |
|
|
| T |
25377078 |
aagtcaacatagcaaagtacagtcacacctgtcggatagaaaactaatgcatgacatacatagtgaagcacataaatcacatagaatttgcataaccaag |
25377177 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
|||||| ||||||||||| |||||| ||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
25377178 |
aattactaagatgtcaaaatatatgatttt-ctattgttaattttaaccacaccaataatttccacttcctttacattgtgagc |
25377260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 29487633 - 29487756
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||||||||||||||| |||| |||||||||||||| |||||||| ||| |||||| ||||||||||| |
|
|
| T |
29487633 |
aagtcagcatagcaaagtacagccacacctgtcagatggaaaactaatgcatgacatacataatgaagcacataaatgatatatgattcgcataaccaag |
29487732 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatat |
136 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
29487733 |
aattaccaagatgtcaaagcatat |
29487756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 16797973 - 16797891
Alignment:
| Q |
36 |
cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattac |
118 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| |||||||||||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
16797973 |
cacacctgtcagatgaaaaactaatatatggcatacataatgaagcacataaatggcacatgattgacataaccaagaattac |
16797891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 1649 - 1843
Alignment:
| Q |
13 |
atgaagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataacc |
109 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
1649 |
atgaagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattcgcataact |
1748 |
T |
|
| Q |
110 |
aagaattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1749 |
aagaattatcaagatgtcaaagtatatggctttgctattgctaattttaaccacaccaaaaattttcacttcctttatattgtgagcggtgcaca |
1843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 5574312 - 5574503
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| | |
|
|
| T |
5574312 |
aagtcagcatagtaaagtacagccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattgacataaccgat |
5574411 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5574412 |
aattaccaagatgtcacagtatatggctttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
5574503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 17648124 - 17647934
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
17648124 |
aagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcaaacataatgaagcacataaataatatatgattgacataaccaag |
17648025 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17648024 |
aattaacaagatgtcagagtatatggccttgctattgctaattttaaccacaccaaaaattt-cacttcctttatattgtgagcggtgcaca |
17647934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 6915168 - 6915016
Alignment:
| Q |
34 |
accacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagta |
133 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||| | | ||||||| ||||||||||| |||||| || |
|
|
| T |
6915168 |
accacacctgtcagatggaaaactaatgcatgacatacataatgaagcacataaatgacatatgattgacataaccaagac----------gtcaaaata |
6915079 |
T |
|
| Q |
134 |
tatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
6915078 |
tatggctttgttattgctaattttaaccacaccaaaaattcccacttcctttatattgagagc |
6915016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 20731544 - 20731469
Alignment:
| Q |
46 |
agatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaa |
121 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||||| |||||||| | | ||||||| |||||| |||||||||||| |
|
|
| T |
20731544 |
agatgaaaaactaatgcatgacatacataatgaagcacataaatgacatatgattgacataactaagaattaccaa |
20731469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 6336808 - 6336617
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6336808 |
aagtcaccatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
6336709 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
6336708 |
aattaccaagatgtcaaagtatatggctttgctattgctaattttaaccacactaaaaatttccacttcctttatattatgagtggtgcaca |
6336617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 56443475 - 56443666
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
56443475 |
aagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaacacatgtcatacataatgaagcacataaataatacatgattggcataaccaaa |
56443574 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
56443575 |
aattacaaagatgtcaaagtatatggctttgctattgctaattttaaccacatcaaaaatttccacttcctttatattgtgggcggtgcaca |
56443666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 34 - 188
Target Start/End: Original strand, 55082804 - 55082958
Alignment:
| Q |
34 |
accacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagta |
133 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55082804 |
accatacttgtcagatagaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaagaattaccaagatgtcaaagta |
55082903 |
T |
|
| Q |
134 |
tatggctttgctattgataattttaaccacaccaaaaatttccacttcctttata |
188 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55082904 |
tatggctttgctattgctaattttaaccacaccaaaaatttccacttcctttata |
55082958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 1613795 - 1613940
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1613795 |
aagtcagcatagtaaagtacaaccacacttgtgagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
1613894 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataatttta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
1613895 |
aattaccaagatgtcaaagtatatggctttgttattgttaatttta |
1613940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 48083291 - 48083474
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgcca--tacataatgaagtacataaataatacatgattggcataacca |
110 |
Q |
| |
|
|||||||||||| ||| ||| ||||| ||||||||||||||||||| |||| || |||||||||||| |||||||| | | ||||||| |||||||| |
|
|
| T |
48083291 |
aagtcagcatagcaaaatacagtcacacctgtcagatggaaaactaatgcatgacacatacataatgaagcacataaatgacatatgattgacataacca |
48083390 |
T |
|
| Q |
111 |
agaattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48083391 |
agaattaccaagatgtcaaaatatatggctttgc--ttgctaattttaaccacaccaaaaatttccacttctcttatattgtgagc |
48083474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 12800553 - 12800675
Alignment:
| Q |
34 |
accacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagta |
133 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| |||||| ||||||| |||||||||| | ||||||| ||||||||| || ||| ||||||||||| || |
|
|
| T |
12800553 |
accacacctgtcagatggaaaactaatgcatgacatacaaaatgaagcacataaataacatatgattgacataaccaaaaactacaaagatgtcaaaata |
12800652 |
T |
|
| Q |
134 |
tatggctttgctattgataattt |
156 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
12800653 |
tatggctttgctattgctaattt |
12800675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 1614324 - 1614377
Alignment:
| Q |
151 |
taattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1614324 |
taattttaaccacaccaaaaatttccactttctttatattgtgagcggtgcaca |
1614377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 42260053 - 42259977
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaat |
89 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| ||||||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
42260053 |
aagtcagcatagcaaagtacagtcacacctgtcagaaggaaaactaatgcatgacatacataatgaagcacataaat |
42259977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 42259968 - 42259925
Alignment:
| Q |
153 |
attttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
42259968 |
attttaaccacacaaaaaatttccatttcctttatattgtgagc |
42259925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 17215246 - 17215306
Alignment:
| Q |
53 |
aaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaaga |
113 |
Q |
| |
|
|||||||| |||| ||||||||||||| |||||||| | | || |||||||||||||||| |
|
|
| T |
17215246 |
aaactaatgcatggcatacataatgaaacacataaatgacatataattggcataaccaaga |
17215306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 20819569 - 20819759
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20819569 |
aagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcaaacataatgaagcacataaataatacatgattggcataaccaag |
20819668 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20819669 |
aattaccaagatgtcaaagtatatggccttgctattgctaattttaaccacaccaaaaattt-cacttcctttatattgtgagcggtgcaca |
20819759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 35235190 - 35235381
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
35235190 |
aagtcagcatagtaaagtacaaccacacatgtcagatggaaaactaatacatgtcaaacataatgaagcacataaataatacatgattgacataaccaag |
35235289 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35235290 |
aattaccaagatgtcaaattatatggctttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
35235381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 54602963 - 54602774
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
54602963 |
aagtcagcatagtaaagtacaaccacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataagacatgattggcataaccaag |
54602864 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgca |
202 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
54602863 |
aattaccaagatgtcaaagtatatgactttgctattgctaattttaaccacaccaaaaattttcatttcctttatattgtgagcggtgca |
54602774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 40066327 - 40066136
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
40066327 |
aagtcaacatagtaaagtacaaccacacttgtcaaatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggtgtaaccaag |
40066228 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40066227 |
aattaccaagatgtcaaagtatatgactttgatattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
40066136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 1092360 - 1092551
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| | |||| |||||||||| |
|
|
| T |
1092360 |
aagtcagcatagtaaagtacaaccacacttgccagatggaaaactaatacatgtcatacataatgaagcacataaataatacttaattgacataaccaag |
1092459 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1092460 |
aattaccaagatgtcacaatatatggctttgctattgctaattttaaccacaccaaaaattttcacttcctttatattgtgagcggtgcaca |
1092551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 24782885 - 24782721
Alignment:
| Q |
41 |
ttgtcagatggaaaactaatacatgccatacataatgaagtacataaa-taatacatgattggcataaccaagaattaccaagatgtcaaagtatatggc |
139 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24782885 |
ttgtcagatggaaaactaatacatgtcatacataataaagcacataaaataatacatgattgacataaccaagaattaccaagatgtcaaagtatatggc |
24782786 |
T |
|
| Q |
140 |
tttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24782785 |
tttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
24782721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 54627866 - 54627672
Alignment:
| Q |
13 |
atgaagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataacc |
109 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||| |||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
54627866 |
atgaagtctgcatagtaaagtacaaccacatttgtctgatgaaaaactaatacatgtcatacataatgaaacacatatataatacatgattggcataacc |
54627767 |
T |
|
| Q |
110 |
aagaattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54627766 |
aagaattaccaagatgtcaaagtatattgctttgctattgctaattttaaccacacaaaaaatttccacttcctttatattgtgagcggtgcaca |
54627672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 32751503 - 32751333
Alignment:
| Q |
34 |
accacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagta |
133 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||| |||||||| || |
|
|
| T |
32751503 |
accacacttgtcagatgaaaaactaatacatgtcatacataatgaagcacataaataatacatgattgacataaccaacaattatcaacatgtcaaaata |
32751404 |
T |
|
| Q |
134 |
tatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32751403 |
tatggttttgctattgctaattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
32751333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 35234110 - 35234271
Alignment:
| Q |
35 |
ccacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagtat |
134 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| |||||||||||||| |||| ||| | | |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35234110 |
ccacacctgtcagatggaaaactaatgcatgacatacataatgaagcacatgaatgacatatgattggcataaccaagaattaccaagatgtcaaaatat |
35234209 |
T |
|
| Q |
135 |
atggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35234210 |
atggctttgctattgctaattttaaccacaccaaaaatttccactccctttatattgtgagc |
35234271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 54493085 - 54493208
Alignment:
| Q |
34 |
accacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataacc-aagaattaccaagatgtcaaagt |
132 |
Q |
| |
|
||||||| ||||| ||| ||||||||| |||| ||||||||||||| |||||||| | | |||||||||||| || || ||||| |||||||||||| | |
|
|
| T |
54493085 |
accacacctgtcaaatgaaaaactaatgcatggtatacataatgaagcacataaatgacatatgattggcatagccaaaaaattatcaagatgtcaaaat |
54493184 |
T |
|
| Q |
133 |
atatggctttgctattgataattt |
156 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
54493185 |
atatggctttgctattgctaattt |
54493208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 55482113 - 55482038
Alignment:
| Q |
35 |
ccacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataacca |
110 |
Q |
| |
|
|||||||||||| ||| ||||||||| |||| |||||||||||||| |||||||| | | |||||||||||||||| |
|
|
| T |
55482113 |
ccacacttgtcatatgaaaaactaatgcatgacatacataatgaagcacataaatgacatatgattggcataacca |
55482038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 55481641 - 55481556
Alignment:
| Q |
38 |
cacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaaga |
123 |
Q |
| |
|
||||||| |||| ||||||||| ||| |||||||||||||| |||||||| | | ||||||||||||||||| ||||||||||| |
|
|
| T |
55481641 |
cacttgttagattaaaaactaatgcattacatacataatgaagcacataaatgacatatgattggcataaccaataattaccaaga |
55481556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 15830690 - 15830499
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15830690 |
aagtcaacatagtaaagtacaaccacacttgtgagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
15830591 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
15830590 |
aattaccaagatgtcaaagtatatggctttgctattgctaattttaaccacaccaaaaaatttcacttcctttatattgtgagcggtgcaca |
15830499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 9708719 - 9708518
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9708719 |
aagtcagcatagtaaagtagaatcacacttgtcagatggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaag |
9708620 |
T |
|
| Q |
113 |
aattaccaagatgtc----------aaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgca |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9708619 |
aattaccaagatgtcaaaggatgtcaaagtatatggctttgctattgctaattttaaccacaccaaaaattttcacttcctttatattgtgagcggtgca |
9708520 |
T |
|
| Q |
203 |
ca |
204 |
Q |
| |
|
|| |
|
|
| T |
9708519 |
ca |
9708518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 36207319 - 36207492
Alignment:
| Q |
16 |
aagtcagcatagtaaagtac---cacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||| |||||||| |||| |||| |||||||||||||| |||||||| | | ||||||| |||||||| |
|
|
| T |
36207319 |
aagtcagcatagcaaagtacaaccacacctgtcacatggaaaattaatgcatgacatacataatgaagcacataaatgacatatgattgacataacca-- |
36207416 |
T |
|
| Q |
113 |
aattaccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36207417 |
--------agatgtcaacatatatgcctttgttattgctaattttaaccacaccaaaaatttcaacttcctttatattgtgagc |
36207492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 48 - 204
Target Start/End: Complemental strand, 11099737 - 11099581
Alignment:
| Q |
48 |
atggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagtatatggctttgctat |
147 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11099737 |
atggaaaactaatacatgtcatacataatgaagcacataaataatacatgattggcataaccaagaattaccaagatgtcaaagtatatggcttcgctat |
11099638 |
T |
|
| Q |
148 |
tgataattttaaccacaccaaaaatttccacttcctttatattgtgagcggtgcaca |
204 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11099637 |
tgctaattttaaccacacaaaaaatttccacttcctttatattgtgagcggtgcaca |
11099581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 1563742 - 1563563
Alignment:
| Q |
16 |
aagtcagcatagtaaagtaccacacttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaat |
115 |
Q |
| |
|
|||||||||||| |||| || || || |||| || ||||| |||| ||| |||||||||||||| |||||||| | | ||||||||||||||||||||| |
|
|
| T |
1563742 |
aagtcagcatagcaaagaacaaccct-gtcaaatagaaaagtaatgcatatcatacataatgaagcacataaatgacatatgattggcataaccaagaat |
1563644 |
T |
|
| Q |
116 |
taccaagatgtcaaagtatatggctttgctattgataattttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
|||| ||||||| || |||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1563643 |
taccgagatgtcgaaatatatggctttgttattgctaatcttaaccacaccaaaaatttccacttcctttatattgtgagc |
1563563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 13098 - 12965
Alignment:
| Q |
53 |
aaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaagaattaccaagatgtcaaagtatatggctttgctattgata |
152 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||||||| | | ||||||||||||||||||| ||||||| |||||||||||| ||||| || |
|
|
| T |
13098 |
aaactaatgcatgacatacataatgaagcacataaatgacatatgattggcataaccaaga----------tgtcaaaatatatggctttgttattgcta |
13009 |
T |
|
| Q |
153 |
attttaaccacaccaaaaatttccacttcctttatattgtgagc |
196 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13008 |
attttaaccacacaaaaaatttccacttcctttatattgtgagc |
12965 |
T |
|
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Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 425154 - 425054
Alignment:
| Q |
16 |
aagtcagcatagtaaagtaccaca---cttgtcagatggaaaactaatacatgccatacataatgaagtacataaataatacatgattggcataaccaag |
112 |
Q |
| |
|
|||||||||||| ||||||| ||| | |||||||| |||||||||| |||| |||||||||||||| |||||||| | | |||||||||||||||||| |
|
|
| T |
425154 |
aagtcagcatagcaaagtacaacaacacctgtcagattgaaaactaatccatgacatacataatgaagcacataaatgacatatgattggcataaccaag |
425055 |
T |
|
| Q |
113 |
a |
113 |
Q |
| |
|
| |
|
|
| T |
425054 |
a |
425054 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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