View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_5 (Length: 451)
Name: NF0256_low_5
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 117 - 438
Target Start/End: Complemental strand, 44975884 - 44975561
Alignment:
| Q |
117 |
gaaccaaatcatagtattcaaaccaatttataattttgaatctctaactaaaggtcttgacaaagccacaacttctgatcatagtatttttt-atgaatt |
215 |
Q |
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| T |
44975884 |
gaaccaaatcatagtattcaaaccaatttataattttgaatctctaactaaaggtcttgacaacgccacaacttctgatcatagtatttttttatgaatt |
44975785 |
T |
|
| Q |
216 |
agacaccgattaataagtgtaaattccaatgaacatttttattttaaataaatgttagaaattttagagatttattgaagaattatcacttttaatagat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44975784 |
agacaccgattaataagtgtaaattccaatgaacatttttattttaaataaatgttagaaattttagagatttattgaacaattatcacttttaatagat |
44975685 |
T |
|
| Q |
316 |
tt-gggggaccaactgattgattccaaacaaagagagtcatacttaacgcgaaagctccttcctgagccaacacacaacataaccgttaaccactgctca |
414 |
Q |
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| T |
44975684 |
tttgggggaccaactgattgattccaaacaaagagagtcatacttaacgcgaaagctccttcttgagccaacacacaacataaccgttaaccactgctca |
44975585 |
T |
|
| Q |
415 |
cgccaccaccggaatattcatctc |
438 |
Q |
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| T |
44975584 |
cgccaccaccggaatattcttctc |
44975561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Original strand, 40909147 - 40909182
Alignment:
| Q |
403 |
aaccactgctcacgccaccaccggaatattcatctc |
438 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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|
| T |
40909147 |
aaccactgctcacgccaccaccggagtattcatctc |
40909182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 438
Target Start/End: Complemental strand, 44985185 - 44985150
Alignment:
| Q |
403 |
aaccactgctcacgccaccaccggaatattcatctc |
438 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| |
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|
| T |
44985185 |
aaccactgctcacgccaccaccggagtattcatctc |
44985150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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