View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0256_low_6 (Length: 440)
Name: NF0256_low_6
Description: NF0256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0256_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 92 - 425
Target Start/End: Complemental strand, 47532933 - 47532600
Alignment:
| Q |
92 |
agttttccttccggtactttcactatcagtgtcggtggcttcactgtcagtgtttgtggcttcactatcggtgtccgtggcttcactatcagtatctgtg |
191 |
Q |
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| T |
47532933 |
agttttccttccagtactttcactatcagtgtcggtggcttcactgtcagtgtttgtggcttcactatcggtgtccgtggcttcactatcagtatctgtg |
47532834 |
T |
|
| Q |
192 |
gcttcactttcactgtcactttcttccaaaacgtacaggtcatagatgcatatcaaggcagctgcagctgcagccataatcatattcatacagagcattc |
291 |
Q |
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| T |
47532833 |
gcttcactttcactgtcactttcttccaaaaggtacaggtcatagatgcatatcaaggcagctgcagctgcagccataatcatattcatacagagcattc |
47532734 |
T |
|
| Q |
292 |
gcctttgcttccgccttcgctcttcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaag |
391 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47532733 |
gcctttgcttccgccttcgctcttcatcgtcatcatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaag |
47532634 |
T |
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| Q |
392 |
tttagctacattactgtttgaaatttacatagag |
425 |
Q |
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| T |
47532633 |
tttagctacattactgtttgaaatttacatagag |
47532600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 39583603 - 39583688
Alignment:
| Q |
174 |
tcactatcagtatctgtggcttcactttcactgtcactttcttccaaaacgtacaggtcatagatgcatatcaaggcagctgcagc |
259 |
Q |
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| T |
39583603 |
tcactatctgtgtctgtgtcttcactttcactgtcactttcttccaaatatttcaggtaatagatacatatcaatgcagccgcagc |
39583688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 39627189 - 39627100
Alignment:
| Q |
315 |
tcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacatta |
404 |
Q |
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||||| ||| |||||||||| ||||| |||||||| ||||||||||||| ||||| ||||||| ||||||||| ||||| |||||||| |
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| T |
39627189 |
tcatcatcatcatttctaccacgtttattatttgaactaaacaagctagttgtcatacttgaaagtctgcattaatgtttaactacatta |
39627100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 39627335 - 39627257
Alignment:
| Q |
178 |
tatcagtatctgtggcttcactttcactgtcactttcttc---caaaacgtacaggtcatagatgcatatcaaggcagc |
253 |
Q |
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| T |
39627335 |
tatcagtgtccgtgtcttcactttcactatcactttcttcttccaaaatgtacaggtaatagatgcctatcaacgcagc |
39627257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 39616467 - 39616378
Alignment:
| Q |
315 |
tcatcgtcaacatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgcattaaagtttagctacatta |
404 |
Q |
| |
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||||| ||| |||||||||| || ||||||||||| ||||||||||||| |||| |||||| ||||||||| |||| |||||||| |
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| T |
39616467 |
tcatcatcatcatttctaccacgctttttatttgaactaaacaagctagtcatcatatttgaaagtctgcattaatgttttactacatta |
39616378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 39616598 - 39616535
Alignment:
| Q |
193 |
cttcactttcactgtcacttt---cttccaaaacgtacaggtcatagatgcatatcaaggcagc |
253 |
Q |
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||||||||||||||||||||| |||| |||| |||||||| |||||||| |||||| ||||| |
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| T |
39616598 |
cttcactttcactgtcactttcttcttctaaaaggtacaggtaatagatgcctatcaacgcagc |
39616535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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